Science Score: 36.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
○DOI references
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○Academic publication links
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✓Committers with academic emails
1 of 3 committers (33.3%) from academic institutions -
○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (17.4%) to scientific vocabulary
Keywords from Contributors
Repository
A better way to explore what is best
Basic Info
- Host: GitHub
- Owner: federicomarini
- License: other
- Language: R
- Default Branch: devel
- Size: 4.43 MB
Statistics
- Stars: 3
- Watchers: 4
- Forks: 1
- Open Issues: 2
- Releases: 0
Metadata Files
README.md
bettr: a better way to explore what is best
<!-- badges: end -->
As new (computational) methods come along, it becomes essential to compare their performance to existing ones via objective and fair benchmarking.
In a benchmarking study, typically many different performance metrics are calculated and used to reflect different aspects of performance. These performance metrics can then be combined into one "overall" ranking. However, not all aspects are equally important to everyone, and thus there is more than one "right" way of aggregating metrics in order to rank methods.
bettr is our proposal to perform this aggregation in an interactive way,
allowing the user to focus on the aspects that are most important to them,
and use different types of visualization approaches, enhancing the final
overview of the benchmarking process.
The screenshots below display two of the representations provided by
bettr, using data from the benchmark of single-cell clustering methods
performed by Duo et al (2018).
Installation
bettr can be installed from Bioconductor (from release 3.19 onwards):
``` r if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")
BiocManager::install("bettr") ```
The latest development version can be installed from GitHub via
r
BiocManager::install("federicomarini/bettr")
Usage
For more details on how to use bettr, we refer to the
vignette.
If you have questions or run into problems, feel free to open an
issue. Try to provide a
reproducible example, and always include the code you used and your session
info, that will make it much easier for us to help.
Contributing to bettr
If you would like to contribute to bettr, you can do so by sending a pull
request to this repository. If the contribution involves changes in the
functionality provided by bettr, we encourage you to first open an issue to
discuss the intended contribution.
Owner
- Name: Federico Marini
- Login: federicomarini
- Kind: user
- Location: Mainz
- Company: University Medical Center, Mainz
- Twitter: FedeBioinfo
- Repositories: 173
- Profile: https://github.com/federicomarini
Virchow Fellow, Bioinformatician @ Institute of Medical Biostatistics, Epidemiology and Informatics, Mainz (@imbeimainz)
GitHub Events
Total
- Push event: 12
- Fork event: 1
- Create event: 2
Last Year
- Push event: 12
- Fork event: 1
- Create event: 2
Committers
Last synced: over 1 year ago
Top Committers
| Name | Commits | |
|---|---|---|
| Charlotte Soneson | c****n@g****m | 200 |
| Federico Marini | m****f@u****e | 31 |
| J Wokaty | j****y | 4 |
Committer Domains (Top 20 + Academic)
Issues and Pull Requests
Last synced: 11 months ago
All Time
- Total issues: 6
- Total pull requests: 17
- Average time to close issues: 3 months
- Average time to close pull requests: 1 day
- Total issue authors: 2
- Total pull request authors: 2
- Average comments per issue: 1.83
- Average comments per pull request: 0.53
- Merged pull requests: 17
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 0
- Pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Issue authors: 0
- Pull request authors: 0
- Average comments per issue: 0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- ansonrel (3)
- csoneson (3)
Pull Request Authors
- csoneson (17)
- federicomarini (3)
Top Labels
Issue Labels
Pull Request Labels
Packages
- Total packages: 1
-
Total downloads:
- bioconductor 3,737 total
- Total dependent packages: 0
- Total dependent repositories: 0
- Total versions: 3
- Total maintainers: 1
bioconductor.org: bettr
A Better Way To Explore What Is Best
- Homepage: https://github.com/federicomarini/bettr
- Documentation: https://bioconductor.org/packages/release/bioc/vignettes/bettr/inst/doc/bettr.pdf
- License: MIT + file LICENSE
-
Latest release: 1.4.0
published about 1 year ago
Rankings
Maintainers (1)
Dependencies
- ComplexHeatmap * imports
- Hmisc * imports
- bslib * imports
- circlize * imports
- cowplot * imports
- dplyr >= 1.0 imports
- ggplot2 * imports
- grDevices * imports
- grid * imports
- methods * imports
- rlang * imports
- scales * imports
- shiny >= 1.6 imports
- shinyjqui * imports
- sortable * imports
- stats * imports
- tibble * imports
- tidyr * imports
- knitr * suggests
- rmarkdown * suggests
- testthat >= 3.0.0 suggests
- actions/cache v1 composite
- actions/checkout v2 composite
- actions/upload-artifact master composite
- r-lib/actions/setup-pandoc master composite
- r-lib/actions/setup-r master composite