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Rhdf5lib

Distribution of the HDF5 library in an R package

https://github.com/huber-group-embl/rhdf5lib

Science Score: 23.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ○
    .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ✓
    Committers with academic emails
    2 of 13 committers (15.4%) from academic institutions
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (7.7%) to scientific vocabulary

Keywords

bioconductor hdf5 hdf5-library

Keywords from Contributors

bioconductor-package rhdf5 bioinformatics core-services u24ca289073 core-package genomics gene nci tcga
Last synced: 6 months ago · JSON representation

Repository

Distribution of the HDF5 library in an R package

Basic Info
Statistics
  • Stars: 6
  • Watchers: 3
  • Forks: 15
  • Open Issues: 10
  • Releases: 0
Topics
bioconductor hdf5 hdf5-library
Created over 8 years ago · Last pushed 11 months ago
Metadata Files
Readme Changelog

README.md

Rhdf5lib

This R/Bioconductor package provides a mechanism to install the HDF5 system library via an R package.

Current Status

| Travis | BioC | Test Coverage | | ------------- |-------------| -----| | Build Status | BioC Status | Codecov |

Contact

For bug reports, please register an issue here on Github. For usage queries please post a question on the Bioconductor Support Forum with the Rhdf5lib tag.

Funding

Funding for continued development and maintenance of this package is provided by the German Network for Bioinformatics Infrastructure

Owner

  • Name: EMBL Huber Group
  • Login: Huber-group-EMBL
  • Kind: organization

Repository for joint projects by members and ex-members of the Huber group at EMBL. Please see also individuals' pages for further repositories.

GitHub Events

Total
  • Push event: 1
  • Pull request event: 1
  • Fork event: 1
Last Year
  • Push event: 1
  • Pull request event: 1
  • Fork event: 1

Committers

Last synced: 9 months ago

All Time
  • Total Commits: 284
  • Total Committers: 13
  • Avg Commits per committer: 21.846
  • Development Distribution Score (DDS): 0.169
Past Year
  • Commits: 5
  • Committers: 3
  • Avg Commits per committer: 1.667
  • Development Distribution Score (DDS): 0.6
Top Committers
Name Email Commits
Mike Smith g****h@g****m 236
Nitesh Turaga n****a@g****m 14
Mike Smith m****0@c****k 11
J Wokaty j****y@s****u 10
vobencha v****a@g****m 2
Michael Lawrence l****i@g****m 2
Hervé Pagès h****s@f****g 2
vobencha v****n@r****g 2
miesav 3****v 1
Shian Su c****b@g****m 1
Martin Morgan m****n@r****g 1
Christian Heckendorf h****c@g****m 1
Martin Morgan m****n@f****g 1
Committer Domains (Top 20 + Academic)
roswellpark.org: 2 fhcrc.org: 1 fredhutch.org: 1 sph.cuny.edu: 1 cam.ac.uk: 1

Issues and Pull Requests

Last synced: 6 months ago

All Time
  • Total issues: 68
  • Total pull requests: 26
  • Average time to close issues: 4 months
  • Average time to close pull requests: about 1 month
  • Total issue authors: 35
  • Total pull request authors: 9
  • Average comments per issue: 5.24
  • Average comments per pull request: 1.69
  • Merged pull requests: 22
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 5
  • Pull requests: 2
  • Average time to close issues: 6 days
  • Average time to close pull requests: about 1 month
  • Issue authors: 3
  • Pull request authors: 1
  • Average comments per issue: 2.8
  • Average comments per pull request: 1.0
  • Merged pull requests: 2
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • grimbough (4)
  • akhst7 (3)
  • mikejiang (3)
  • kdkorthauer (2)
  • timothy-barry (2)
  • sneumann (2)
  • PeteHaitch (2)
  • benfulton (1)
  • GACGAMA (1)
  • kevinrue (1)
  • mahendra-mariadassou (1)
  • stanstrup (1)
  • zyb1984 (1)
  • MBXBB (1)
  • hosseinvk (1)
Pull Request Authors
  • grimbough (10)
  • lawremi (2)
  • mikejiang (1)
  • benfulton (1)
  • heckendorfc (1)
  • LTLA (1)
  • miesav (1)
  • hpages (1)
  • mtmorgan (1)
Top Labels
Issue Labels
Pull Request Labels

Packages

  • Total packages: 1
  • Total downloads:
    • bioconductor 2,487,858 total
  • Total dependent packages: 3
  • Total dependent repositories: 0
  • Total versions: 7
  • Total maintainers: 1
bioconductor.org: Rhdf5lib

hdf5 library as an R package

  • Versions: 7
  • Dependent Packages: 3
  • Dependent Repositories: 0
  • Downloads: 2,487,858 Total
Rankings
Dependent repos count: 0.0%
Downloads: 1.5%
Forks count: 4.3%
Average: 7.0%
Dependent packages count: 11.1%
Stargazers count: 18.1%
Maintainers (1)
grimbough@gmail.com
Last synced: 6 months ago

Dependencies

DESCRIPTION cran
  • R >= 4.0.0 depends
  • BiocStyle * suggests
  • knitr * suggests
  • mockery * suggests
  • rmarkdown * suggests
  • tinytest * suggests
.github/workflows/auto-comment.yml actions
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.github/workflows/main.yml actions
  • actions/checkout v3 composite
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  • grimbough/bioc-actions/build-install-check v1 composite
  • grimbough/bioc-actions/run-BiocCheck v1 composite
  • grimbough/bioc-actions/setup-bioc v1 composite
  • r-lib/actions/setup-pandoc v2 composite
  • r-lib/actions/setup-r-dependencies v2 composite
.github/workflows/test_hdf5.yml actions
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  • r-lib/actions/setup-r v1 composite
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.github/workflows/mac-conda.yml actions
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