Science Score: 36.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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✓codemeta.json file
Found codemeta.json file -
○.zenodo.json file
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✓DOI references
Found 2 DOI reference(s) in README -
○Academic publication links
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✓Committers with academic emails
6 of 14 committers (42.9%) from academic institutions -
○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (11.4%) to scientific vocabulary
Keywords
Keywords from Contributors
Repository
Basic Info
- Host: GitHub
- Owner: SydneyBioX
- Language: R
- Default Branch: devel
- Homepage: https://sydneybiox.github.io/Statial/
- Size: 129 MB
Statistics
- Stars: 6
- Watchers: 8
- Forks: 1
- Open Issues: 7
- Releases: 0
Topics
Metadata Files
README.md
Statial
Overview
Statial is a suite of functions for identifying changes in cell state. The functionality provided by Statial provides robust quantification of cell type localisation which are invariant to changes in tissue structure. In addition to this Statial uncovers changes in marker expression associated with varying levels of localisation. These features can be used to explore how the structure and function of different cell types may be altered by the agents they are surrounded with.
Installation
Installing the package from Bioconductor. ```r if (!requireNamespace("BiocManager", quietly = TRUE)) { install.packages("BiocManager") }
BiocManager::install("Statial") ```
Otherwise, install the development version from GitHub.
```r
Install the development version from GitHub:
install.packages("devtools")
devtools::install_github("SydneyBioX/Statial") library(Statial) ```
Submitting an issue or feature request
Statial is still under active development. We would greatly appreciate any and
all feedback related to the package.
- R package related issues should be raised here.
- For general questions and feedback, please contact us directly via ellis.patrick@sydney.edu.au.
Authors
- Farhan Ameen - Linkedin
- Sourish Iyengar
- Alex Qin - Linkedin
- Shila Ghazanfar - @shazanfar
- Ellis Patrick - @TheEllisPatrick
Kontextual pre-print
Owner
- Name: Sydney Precision Data Science Centre
- Login: SydneyBioX
- Kind: organization
- Location: Sydney, Australia
- Website: https://www.sydney.edu.au/science/our-research/research-centres/sydney-precision-data-science-centre.html
- Twitter: sydneybioinfo
- Repositories: 76
- Profile: https://github.com/SydneyBioX
SPDSC alliance brings together multiple research groups and junior and senior researchers with shared interests in bioinformatics and computational sciences.
GitHub Events
Total
- Issues event: 5
- Watch event: 1
- Issue comment event: 1
- Push event: 12
- Pull request event: 2
- Create event: 1
Last Year
- Issues event: 5
- Watch event: 1
- Issue comment event: 1
- Push event: 12
- Pull request event: 2
- Create event: 1
Committers
Last synced: over 2 years ago
Top Committers
| Name | Commits | |
|---|---|---|
| Alex Qin | a****q@m****u | 92 |
| Nick | n****r@g****m | 78 |
| Ellis Patrick | e****7@g****m | 47 |
| fame2827 | f****7@u****u | 38 |
| Farhan Ameen | f****a@m****u | 33 |
| Nicolas Canete | n****0@g****m | 24 |
| Ellis Patrick | e****k@s****u | 12 |
| Sourish | 5****9 | 10 |
| Sourish Iyengar | s****9@u****u | 8 |
| J Wokaty | j****y@s****u | 4 |
| rubak | r****k@m****k | 4 |
| Farhan Ameen | f****n@F****n | 3 |
| Nitesh Turaga | n****a@g****m | 1 |
| J Wokaty | j****y | 1 |
Committer Domains (Top 20 + Academic)
Issues and Pull Requests
Last synced: 6 months ago
Packages
- Total packages: 1
-
Total downloads:
- bioconductor 6,314 total
- Total dependent packages: 0
- Total dependent repositories: 0
- Total versions: 8
- Total maintainers: 1
bioconductor.org: Statial
A package to identify changes in cell state relative to spatial associations
- Homepage: https://sydneybiox.github.io/Statial https://github.com/SydneyBioX/Statial/issues
- Documentation: https://bioconductor.org/packages/release/bioc/vignettes/Statial/inst/doc/Statial.pdf
- License: GPL-3
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Latest release: 1.10.0
published 10 months ago
Rankings
Maintainers (1)
Dependencies
- R >= 4.1.0 depends
- BiocParallel * imports
- spatstat.geom * imports
- BiocStyle * suggests
- knitr * suggests