Science Score: 23.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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✓codemeta.json file
Found codemeta.json file -
○.zenodo.json file
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○DOI references
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○Academic publication links
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✓Committers with academic emails
5 of 37 committers (13.5%) from academic institutions -
○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (5.9%) to scientific vocabulary
Keywords from Contributors
bioconductor-package
bioconductor
bioinformatics
mass-spectrometry
rnaseq
core-package
derfinder
annotation-agnostic
genomics
ncbi-geo
Last synced: 10 months ago
·
JSON representation
Repository
Devel repository for minfi
Basic Info
- Host: GitHub
- Owner: hansenlab
- Language: R
- Default Branch: devel
- Size: 1.04 MB
Statistics
- Stars: 61
- Watchers: 11
- Forks: 72
- Open Issues: 131
- Releases: 0
Created over 12 years ago
· Last pushed about 2 years ago
Metadata Files
Readme
README.md
R package: minfi
This is the developer version of Bioconductor package minfi. Install in R as:
r
if (!requireNamespace("BiocManager", quietly=TRUE))
install.packages("BiocManager")
BiocManager::install('minfi')
Software status
| Resource: | Bioconductor | Travis CI |
| ------------- | ------------------- | ------------- |
| Platforms: | Multiple | Linux |
| R CMD check | 
(release)
(devel) | 
|
| Test coverage | | 
| |
Owner
- Name: Hansen lab
- Login: hansenlab
- Kind: organization
- Location: Baltimore
- Website: https://www.hansenlab.org
- Repositories: 44
- Profile: https://github.com/hansenlab
Research in statistical genomics
GitHub Events
Total
- Issues event: 5
- Watch event: 4
- Issue comment event: 9
- Pull request event: 4
- Fork event: 6
Last Year
- Issues event: 5
- Watch event: 4
- Issue comment event: 9
- Pull request event: 4
- Fork event: 6
Committers
Last synced: over 2 years ago
Top Committers
| Name | Commits | |
|---|---|---|
| Kasper Daniel Hansen | k****n@g****m | 229 |
| Kasper D. Hansen | k****n@s****u | 209 |
| khansen | k****n@b****8 | 197 |
| Peter Hickey | p****y@g****m | 168 |
| Jean-Philippe Fortin | j****n@j****u | 43 |
| d.tenenbaum | d****m@b****8 | 28 |
| Dan Tenenbaum | d****a@f****g | 25 |
| ririzarr | r****y@g****m | 20 |
| Shan Andrews | s****7@j****u | 18 |
| Herve Pages | h****s@f****g | 15 |
| Nitesh Turaga | n****a@g****m | 15 |
| ririzarr | r****r@b****8 | 12 |
| Bioconductor Git-SVN Bridge | b****c@b****g | 11 |
| Hervé Pagès | h****s@f****g | 11 |
| hpages@fhcrc.org | h****s@f****g@b****8 | 10 |
| Rafael Irizarry | r****r@j****u | 6 |
| Martin Aryee | m****e@g****m | 4 |
| hagai | h****6@g****m | 4 |
| Hervé Pagès | h****b@g****m | 3 |
| Jean-Philippe Fortin | f****6@g****m | 2 |
| ttriche | t****e@g****m | 2 |
| vobencha | v****n@r****g | 2 |
| vobencha | v****a@g****m | 2 |
| LiNk-NY | m****9@g****m | 1 |
| Marc Carlson | m****n@f****g | 1 |
| Andrew Jaffe | a****e@l****g | 1 |
| Valerie Obenchain | v****a@f****g | 1 |
| nilsigem | n****a@y****e | 1 |
| Kayla-Morrell | k****l@r****g | 1 |
| Martin Morgan | m****n@f****g | 1 |
| and 7 more... | ||
Committer Domains (Top 20 + Academic)
fhcrc.org: 7
roswellpark.org: 2
jhsph.edu: 2
jimmy.harvard.edu: 1
yahoo.de: 1
libd.org: 1
fredhutch.org: 1
bioconductor.org: 1
jhu.edu: 1
stat.berkeley.edu: 1
Issues and Pull Requests
Last synced: 10 months ago
All Time
- Total issues: 106
- Total pull requests: 17
- Average time to close issues: 3 months
- Average time to close pull requests: about 1 year
- Total issue authors: 92
- Total pull request authors: 12
- Average comments per issue: 2.03
- Average comments per pull request: 0.65
- Merged pull requests: 3
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 7
- Pull requests: 7
- Average time to close issues: N/A
- Average time to close pull requests: 2 days
- Issue authors: 7
- Pull request authors: 3
- Average comments per issue: 0.0
- Average comments per pull request: 0.0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- kasperdanielhansen (5)
- nikolayaivanov (3)
- demis001 (3)
- prasundutta87 (3)
- VilainLab (2)
- yeswzc (2)
- aminards (2)
- AzlanNI (2)
- aa20g217 (1)
- kimberzhu (1)
- LambertDorssers (1)
- chanmur (1)
- kendrix10 (1)
- stephaniehicks (1)
- GarlicPaasta (1)
Pull Request Authors
- AmericanoAndAlcohol (4)
- rafalab (3)
- VasLem (2)
- jmacdon (2)
- wcwr (2)
- jonathonl (2)
- metamaden (1)
- allanjust (1)
- karoliskoncevicius (1)
- sandrews5 (1)
- ttriche (1)
Top Labels
Issue Labels
Pull Request Labels
Packages
- Total packages: 1
-
Total downloads:
- bioconductor 868,265 total
- Total dependent packages: 31
- Total dependent repositories: 0
- Total versions: 7
- Total maintainers: 1
bioconductor.org: minfi
Analyze Illumina Infinium DNA methylation arrays
- Homepage: https://github.com/hansenlab/minfi
- Documentation: https://bioconductor.org/packages/release/bioc/vignettes/minfi/inst/doc/minfi.pdf
- License: Artistic-2.0
-
Latest release: 1.54.1
published about 1 year ago
Rankings
Dependent repos count: 0.0%
Forks count: 0.3%
Average: 1.9%
Dependent packages count: 2.4%
Downloads: 2.9%
Stargazers count: 3.7%
Maintainers (1)
Last synced:
10 months ago
Dependencies
DESCRIPTION
cran
- BiocGenerics >= 0.15.3 depends
- Biostrings * depends
- GenomicRanges * depends
- SummarizedExperiment >= 1.1.6 depends
- bumphunter >= 1.1.9 depends
- methods * depends
- Biobase >= 2.33.2 imports
- BiocParallel * imports
- DelayedArray >= 0.15.16 imports
- DelayedMatrixStats >= 1.3.4 imports
- GEOquery * imports
- GenomeInfoDb * imports
- HDF5Array * imports
- IRanges * imports
- MASS * imports
- RColorBrewer * imports
- S4Vectors * imports
- beanplot * imports
- data.table * imports
- genefilter * imports
- grDevices * imports
- graphics * imports
- illuminaio >= 0.23.2 imports
- lattice * imports
- limma * imports
- mclust * imports
- nlme * imports
- nor1mix * imports
- preprocessCore * imports
- quadprog * imports
- reshape * imports
- siggenes * imports
- stats * imports
- utils * imports
- BiocStyle * suggests
- FlowSorted.Blood.450k >= 1.0.1 suggests
- IlluminaHumanMethylation450kanno.ilmn12.hg19 >= 0.2.1 suggests
- IlluminaHumanMethylation450kmanifest >= 0.2.0 suggests
- RUnit * suggests
- digest * suggests
- knitr * suggests
- minfiData >= 0.18.0 suggests
- minfiDataEPIC * suggests
- rmarkdown * suggests
- tools * suggests