Science Score: 36.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
○DOI references
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○Academic publication links
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✓Committers with academic emails
1 of 3 committers (33.3%) from academic institutions -
○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (3.8%) to scientific vocabulary
Keywords
bioconductor
genetics
hail
r
Keywords from Contributors
bioconductor-packages
bioinformatics
gene
genomics
core-package
u24ca289073
Last synced: 6 months ago
·
JSON representation
Repository
Using hail via Basilisk
Basic Info
- Host: GitHub
- Owner: vjcitn
- License: gpl-3.0
- Language: R
- Default Branch: main
- Homepage: https://vjcitn.github.io/BiocHail
- Size: 19.2 MB
Statistics
- Stars: 6
- Watchers: 4
- Forks: 0
- Open Issues: 4
- Releases: 0
Topics
bioconductor
genetics
hail
r
Created about 3 years ago
· Last pushed 8 months ago
Metadata Files
Readme
Changelog
README.md
BiocHail
This is a multi-step overview of Hail for genetic association studies
Tutorial overview
The basic layout, following the Hail GWAS tutorial:
We'll see how to use a very small excerpt from the 1000 genomes study to produce
Along the way, we illustrate and adjust for population stratification:
Larger data problem -- 1000 genomes data with T2T reference
We have arranged a serialization of genotypes on chromosome 17 for 3202 1000 genomes samples.
Relevant LD resources ... in which cloud?
Still to come.
Simulating multipopulation genotype surveys
Still to come.
Binding phenotypes from FHIR to Hail
Still to come.
Owner
- Name: Vince Carey
- Login: vjcitn
- Kind: user
- Location: Boston
- Repositories: 351
- Profile: https://github.com/vjcitn
GitHub Events
Total
- Push event: 4
- Pull request event: 1
- Create event: 2
Last Year
- Push event: 4
- Pull request event: 1
- Create event: 2
Committers
Last synced: over 2 years ago
Top Committers
| Name | Commits | |
|---|---|---|
| vjcitn | s****c@c****u | 73 |
| J Wokaty | j****y | 2 |
| lshep | l****d@r****g | 1 |
Committer Domains (Top 20 + Academic)
Issues and Pull Requests
Last synced: 7 months ago
All Time
- Total issues: 4
- Total pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Total issue authors: 1
- Total pull request authors: 0
- Average comments per issue: 0.0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 0
- Pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Issue authors: 0
- Pull request authors: 0
- Average comments per issue: 0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- vjcitn (4)
Pull Request Authors
- vjcitn (1)
Top Labels
Issue Labels
enhancement (3)
Pull Request Labels
Packages
- Total packages: 1
-
Total downloads:
- bioconductor 3,515 total
- Total dependent packages: 0
- Total dependent repositories: 0
- Total versions: 6
- Total maintainers: 1
bioconductor.org: BiocHail
basilisk and hail
- Homepage: https://github.com/vjcitn/BiocHail
- Documentation: https://bioconductor.org/packages/release/bioc/vignettes/BiocHail/inst/doc/BiocHail.pdf
- License: Artistic-2.0
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Latest release: 1.7.1
published 9 months ago
Rankings
Dependent repos count: 0.0%
Dependent packages count: 0.0%
Stargazers count: 12.3%
Forks count: 19.8%
Average: 26.3%
Downloads: 99.6%
Maintainers (1)
Last synced:
6 months ago
Dependencies
DESCRIPTION
cran
- R >= 4.2 depends
- BiocFileCache * imports
- basilisk * imports
- reticulate * imports
- utils * imports
- BiocStyle * suggests
- ggplot2 * suggests
- knitr * suggests
- testthat * suggests