MsBackendMetaboLights
MsBackend allowing to retrieve MS data from the MetaboLights repository.
https://github.com/rformassspectrometry/msbackendmetabolights
Science Score: 26.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
○DOI references
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○Academic publication links
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○Academic email domains
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○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (9.6%) to scientific vocabulary
Keywords
Repository
MsBackend allowing to retrieve MS data from the MetaboLights repository.
Basic Info
- Host: GitHub
- Owner: rformassspectrometry
- Language: R
- Default Branch: main
- Homepage: https://rformassspectrometry.github.io/MsBackendMetaboLights/
- Size: 4.62 MB
Statistics
- Stars: 2
- Watchers: 4
- Forks: 0
- Open Issues: 0
- Releases: 0
Topics
Metadata Files
README.md
Retrieve Mass Spectrometry Data from MetaboLights
This repository provides a backend for Spectra objects that represents and retrieves mass spectrometry (MS) data directly from metabolomics experiments deposited at the public MetaboLights repository. Mass spectrometry data files of an experiment are downloaded and cached locally using the BiocFileCache package.
Installation
The package can be installed with
r
install.packages("BiocManager")
BiocManager::install("RforMassSpectrometry/MsBackendMetaboLights")
Contributions
Contributions are highly welcome and should follow the contribution guidelines. Also, please check the coding style guidelines in the RforMassSpectrometry vignette.
Owner
- Name: RforMassSpectrometry
- Login: rformassspectrometry
- Kind: organization
- Email: maintainer@rformassspectrometry.org
- Website: https://www.rformassspectrometry.org/
- Repositories: 33
- Profile: https://github.com/rformassspectrometry
R packages for mass spectrometry
GitHub Events
Total
- Watch event: 1
- Push event: 20
- Pull request review comment event: 1
- Pull request event: 5
- Pull request review event: 3
- Create event: 1
Last Year
- Watch event: 1
- Push event: 20
- Pull request review comment event: 1
- Pull request event: 5
- Pull request review event: 3
- Create event: 1
Issues and Pull Requests
Last synced: 12 months ago
All Time
- Total issues: 2
- Total pull requests: 7
- Average time to close issues: 5 days
- Average time to close pull requests: 1 day
- Total issue authors: 1
- Total pull request authors: 1
- Average comments per issue: 7.5
- Average comments per pull request: 0.57
- Merged pull requests: 7
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 2
- Pull requests: 7
- Average time to close issues: 5 days
- Average time to close pull requests: 1 day
- Issue authors: 1
- Pull request authors: 1
- Average comments per issue: 7.5
- Average comments per pull request: 0.57
- Merged pull requests: 7
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- philouail (2)
Pull Request Authors
- jorainer (13)
Top Labels
Issue Labels
Pull Request Labels
Packages
- Total packages: 1
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Total downloads:
- bioconductor 2,162 total
- Total dependent packages: 0
- Total dependent repositories: 0
- Total versions: 2
- Total maintainers: 1
bioconductor.org: MsBackendMetaboLights
Retrieve Mass Spectrometry Data from MetaboLights
- Homepage: https://github.com/RforMassSpectrometry/MsBackendMetaboLights
- Documentation: https://bioconductor.org/packages/release/bioc/vignettes/MsBackendMetaboLights/inst/doc/MsBackendMetaboLights.pdf
- License: Artistic-2.0
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Latest release: 1.2.0
published about 1 year ago
Rankings
Maintainers (1)
Dependencies
- actions/cache v2 composite
- actions/checkout v2 composite
- actions/upload-artifact master composite
- r-lib/actions/setup-pandoc v2 composite
- r-lib/actions/setup-r v2 composite
- R >= 4.2.0 depends
- BiocFileCache * imports
- ProtGenerics * imports
- Spectra * imports
- curl * imports
- methods * imports
- BiocStyle * suggests
- knitr * suggests
- mzR * suggests
- rmarkdown * suggests
- testthat * suggests