Science Score: 36.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
○DOI references
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○Academic publication links
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✓Committers with academic emails
3 of 12 committers (25.0%) from academic institutions -
○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (8.6%) to scientific vocabulary
Keywords
Keywords from Contributors
Repository
Toolkit for Single-Cell Velocity
Basic Info
- Host: GitHub
- Owner: kevinrue
- License: other
- Language: R
- Default Branch: devel
- Homepage: https://kevinrue.github.io/velociraptor/
- Size: 26.5 MB
Statistics
- Stars: 58
- Watchers: 6
- Forks: 9
- Open Issues: 21
- Releases: 0
Topics
Metadata Files
README.md
velociraptor
velociraptor provides an R toolkit for single-cell velocity computation.
Bioconductor release status
| Branch | R CMD check | Last updated |
|:----------------:|:----------------:|:------------:|
| devel | 
| 
|
| release | 
| 
Installation
velociraptor can be easily installed from Bioconductor using BiocManager::install():
```r if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("velociraptor")
or also...
BiocManager::install("velociraptor", dependencies = TRUE) ```
Setting dependencies = TRUE should ensure that all packages, including the ones in the Suggests: field of the DESCRIPTION file, are installed - this can be essential if you want to reproduce the code in the vignette, for example.
Owner
- Name: Kevin Rue-Albrecht
- Login: kevinrue
- Kind: user
- Location: Oxford
- Company: University of Oxford
- Website: http://kevinrue.github.io/
- Twitter: KevinRUE67
- Repositories: 245
- Profile: https://github.com/kevinrue
Ingénieur diplômé; Computational Biologist; Software engineer; Bioconductor contributor
GitHub Events
Total
- Issues event: 1
- Watch event: 5
- Delete event: 1
- Issue comment event: 5
- Push event: 12
- Pull request event: 3
- Create event: 2
Last Year
- Issues event: 1
- Watch event: 5
- Delete event: 1
- Issue comment event: 5
- Push event: 12
- Pull request event: 3
- Create event: 2
Committers
Last synced: 11 months ago
Top Committers
| Name | Commits | |
|---|---|---|
| Kevin Rue-Albrecht | k****7@g****m | 50 |
| LTLA | i****s@g****m | 28 |
| Charlotte Soneson | c****n@g****m | 15 |
| J Wokaty | j****y@s****u | 10 |
| Nitesh Turaga | n****a@g****m | 8 |
| A Wokaty | a****y@s****u | 2 |
| Tim Triche, Jr | t****e@g****m | 1 |
| Michael Stadler | s****l@g****m | 1 |
| Michael Milton | t****t@g****m | 1 |
| Hervé Pagès | h****b@g****m | 1 |
| Federico Marini | m****f@u****e | 1 |
| Aaron Lun | l****n@g****m | 1 |
Committer Domains (Top 20 + Academic)
Issues and Pull Requests
Last synced: 10 months ago
All Time
- Total issues: 36
- Total pull requests: 60
- Average time to close issues: about 1 month
- Average time to close pull requests: 5 days
- Total issue authors: 21
- Total pull request authors: 8
- Average comments per issue: 3.58
- Average comments per pull request: 1.4
- Merged pull requests: 53
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 7
- Pull requests: 12
- Average time to close issues: 6 days
- Average time to close pull requests: about 3 hours
- Issue authors: 2
- Pull request authors: 2
- Average comments per issue: 5.29
- Average comments per pull request: 0.08
- Merged pull requests: 11
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- kevinrue (14)
- zh-zhang1984 (2)
- shijianasdf (2)
- lazappi (2)
- zyb1984 (1)
- maximilian-heeg (1)
- pshukla63 (1)
- cmulittlechild (1)
- tuqiang2014 (1)
- frenkiboy (1)
- cstrlln (1)
- csoneson (1)
- andrewjkwok (1)
- vinay-swamy (1)
- gdagstn (1)
Pull Request Authors
- kevinrue (54)
- csoneson (12)
- multimeric (2)
- federicomarini (2)
- ATpoint (1)
- LTLA (1)
- mbstadler (1)
- ttriche (1)
Top Labels
Issue Labels
Pull Request Labels
Packages
- Total packages: 1
-
Total downloads:
- bioconductor 12,980 total
- Total dependent packages: 0
- Total dependent repositories: 0
- Total versions: 6
- Total maintainers: 1
bioconductor.org: velociraptor
Toolkit for Single-Cell Velocity
- Homepage: https://github.com/kevinrue/velociraptor
- Documentation: https://bioconductor.org/packages/release/bioc/vignettes/velociraptor/inst/doc/velociraptor.pdf
- License: MIT + file LICENSE
-
Latest release: 1.18.0
published about 1 year ago
Rankings
Maintainers (1)
Dependencies
- SummarizedExperiment * depends
- BiocGenerics * imports
- BiocParallel * imports
- BiocSingular * imports
- DelayedArray * imports
- Matrix * imports
- S4Vectors * imports
- SingleCellExperiment * imports
- basilisk * imports
- methods * imports
- reticulate * imports
- scuttle * imports
- stats * imports
- zellkonverter * imports
- BiocStyle * suggests
- GGally * suggests
- Rtsne * suggests
- cowplot * suggests
- ggplot2 * suggests
- grDevices * suggests
- graphics * suggests
- knitr * suggests
- metR * suggests
- patchwork * suggests
- pkgdown * suggests
- rmarkdown * suggests
- scRNAseq * suggests
- scater * suggests
- scran * suggests
- testthat * suggests
- actions/cache v3 composite
- actions/checkout v3 composite
- actions/upload-artifact master composite
- docker/build-push-action v1 composite
- r-lib/actions/setup-pandoc v2 composite
- r-lib/actions/setup-r v2 composite
- bioconductor/bioconductor_docker devel build