cellmigRation
An R package for tracking cells and analyzing their trajectories
Science Score: 10.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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○codemeta.json file
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○.zenodo.json file
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○DOI references
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○Academic publication links
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✓Committers with academic emails
1 of 6 committers (16.7%) from academic institutions -
○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (3.2%) to scientific vocabulary
Keywords
bioconductor-package
cell-tracking
r-package
shiny
trajectory-analysis
Last synced: 6 months ago
·
JSON representation
Repository
An R package for tracking cells and analyzing their trajectories
Basic Info
- Host: GitHub
- Owner: ocbe-uio
- Language: R
- Default Branch: master
- Homepage: https://bioconductor.org/packages/cellmigRation/
- Size: 11.2 MB
Statistics
- Stars: 0
- Watchers: 2
- Forks: 1
- Open Issues: 3
- Releases: 0
Topics
bioconductor-package
cell-tracking
r-package
shiny
trajectory-analysis
Created over 6 years ago
· Last pushed almost 4 years ago
Metadata Files
Readme
README
## cellmigRation cellmigRation: An R package for tracking cells and analyzing their trajectories. ## Installation cellmigRation is under active development and a stable version is yet to be released. However, you can install the current development version of cellmigRation from GitHub. The repo is: "ocbe-uio/cellmigRation" Date: 2021-02-08
Owner
- Name: Oslo Centre for Biostatistics and Epidemiology
- Login: ocbe-uio
- Kind: organization
- Location: Oslo, Norway
- Website: https://www.med.uio.no/imb/english/research/centres/ocbe/
- Twitter: OCBE_UniOslo
- Repositories: 22
- Profile: https://github.com/ocbe-uio
This is where we host some of the scientific software we produce at OCBE, a joint center between the University of Oslo and the Oslo University Hospital.
GitHub Events
Total
Last Year
Committers
Last synced: 8 months ago
Top Committers
| Name | Commits | |
|---|---|---|
| Waldir Leoncio | w****o@g****m | 705 |
| Salim Ghannoum | 3****t | 298 |
| Damiano Fantini | d****i@g****m | 177 |
| Øystein Sørensen | o****n@h****m | 40 |
| Øystein Sørensen | o****s@m****o | 20 |
| Nitesh Turaga | n****a@g****m | 4 |
Committer Domains (Top 20 + Academic)
Issues and Pull Requests
Last synced: 8 months ago
All Time
- Total issues: 42
- Total pull requests: 32
- Average time to close issues: 2 months
- Average time to close pull requests: 1 day
- Total issue authors: 3
- Total pull request authors: 4
- Average comments per issue: 2.29
- Average comments per pull request: 0.53
- Merged pull requests: 29
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 0
- Pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Issue authors: 0
- Pull request authors: 0
- Average comments per issue: 0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- wleoncio (34)
- dami82 (4)
- osorensen (4)
Pull Request Authors
- osorensen (22)
- SystemsBiologist (5)
- dami82 (3)
- wleoncio (2)
Top Labels
Issue Labels
bug (11)
documentation (11)
enhancement (9)
help wanted (7)
shiny (4)
package (3)
wontfix (1)
good first issue (1)
question (1)
Pull Request Labels
documentation (1)
help wanted (1)
question (1)
Packages
- Total packages: 1
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Total downloads:
- bioconductor 6,975 total
- Total dependent packages: 0
- Total dependent repositories: 0
- Total versions: 5
- Total maintainers: 1
bioconductor.org: cellmigRation
Track Cells, Analyze Cell Trajectories and Compute Migration Statistics
- Homepage: https://github.com/ocbe-uio/cellmigRation/
- Documentation: https://bioconductor.org/packages/release/bioc/vignettes/cellmigRation/inst/doc/cellmigRation.pdf
- License: GPL-2
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Latest release: 1.16.0
published 10 months ago
Rankings
Dependent repos count: 0.0%
Dependent packages count: 0.0%
Average: 27.7%
Downloads: 83.0%
Maintainers (1)
Last synced:
6 months ago
Dependencies
DESCRIPTION
cran
- R >= 4.1 depends
- foreach * depends
- methods * depends
- FME * imports
- FactoMineR * imports
- Hmisc * imports
- SpatialTools * imports
- doParallel * imports
- grDevices * imports
- graphics * imports
- matrixStats * imports
- parallel * imports
- reshape2 * imports
- sp * imports
- stats * imports
- tiff * imports
- utils * imports
- vioplot * imports
- BiocGenerics * suggests
- BiocManager * suggests
- RUnit * suggests
- dplyr * suggests
- ggplot2 * suggests
- kableExtra * suggests
- knitr * suggests
- rgl * suggests
- rmarkdown * suggests