Science Score: 26.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
○DOI references
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○Academic publication links
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○Academic email domains
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○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (16.7%) to scientific vocabulary
Keywords
Repository
Dashboard for microbiome data analysis with mia
Basic Info
- Host: GitHub
- Owner: microbiome
- Language: R
- Default Branch: devel
- Homepage: https://miadash-microbiome.2.rahtiapp.fi/
- Size: 1.45 MB
Statistics
- Stars: 1
- Watchers: 1
- Forks: 4
- Open Issues: 7
- Releases: 0
Topics
Metadata Files
README.md
miaDash 
The goal of miaDash is to provide a user-friendly interface to import, manipulate, analyse and visualise TreeSummarizedExperiment objects.
Usage
miaDash is available online at this address. While suitable for small and medium datasets, the online version may slow down when larger datasets are analysed (> 500 samples). In this case, the app can be installed and run locally. Either way, functionality to subset and agglomerate the data is also provided in the app.
Installation instructions
The release version can be installed from Bioconductor as follows:
``` if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager")
BiocManager::install("miaDash") ```
Contributors or users interested in the latest functionality can install the devel version as follows:
remotes::install_github("microbiome/miaDash")
Example
The basic functionality of miaDash can be explored as follows:
```
Import miaDash
library(miaDash)
Launch miaDash
if (interactive()) { miaDash() } ```
Code of Conduct
Please note that the miaDash project is released with a Contributor Code of Conduct. By contributing to this project, you agree to abide by its terms. Contributions are welcome in the form of feedback, issues and pull requests. You can find the contributor guidelines of the miaverse here.
Acknowledgements
miaDash results from the joint effort of the larger R/Bioconductor community. In particular, this software mainly depends on the following packages:
Owner
- Name: microbiome
- Login: microbiome
- Kind: organization
- Email: microbiome-admin@googlegroups.com
- Location: Tools for microbiome analytics
- Website: microbiome.github.com
- Repositories: 35
- Profile: https://github.com/microbiome
Microbiome research methods
GitHub Events
Total
- Issues event: 6
- Delete event: 10
- Issue comment event: 10
- Push event: 72
- Pull request review event: 1
- Pull request event: 27
- Create event: 10
Last Year
- Issues event: 6
- Delete event: 10
- Issue comment event: 10
- Push event: 72
- Pull request review event: 1
- Pull request event: 27
- Create event: 10
Issues and Pull Requests
Last synced: 6 months ago
All Time
- Total issues: 7
- Total pull requests: 23
- Average time to close issues: about 24 hours
- Average time to close pull requests: 1 day
- Total issue authors: 2
- Total pull request authors: 4
- Average comments per issue: 0.71
- Average comments per pull request: 0.13
- Merged pull requests: 20
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 7
- Pull requests: 22
- Average time to close issues: about 24 hours
- Average time to close pull requests: 1 day
- Issue authors: 2
- Pull request authors: 3
- Average comments per issue: 0.71
- Average comments per pull request: 0.14
- Merged pull requests: 19
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- RiboRings (5)
- TuomasBorman (2)
Pull Request Authors
- RiboRings (24)
- ArioMoniri (2)
- ake123 (1)
- federicomarini (1)
Top Labels
Issue Labels
Pull Request Labels
Packages
- Total packages: 1
-
Total downloads:
- bioconductor 1,209 total
- Total dependent packages: 0
- Total dependent repositories: 0
- Total versions: 1
- Total maintainers: 1
bioconductor.org: miaDash
Shiny app for the interactive analysis and exploration of microbiome data
- Homepage: https://github.com/microbiome/miaDash
- Documentation: https://bioconductor.org/packages/release/bioc/vignettes/miaDash/inst/doc/miaDash.pdf
- License: Artistic-2.0
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Latest release: 1.0.0
published 10 months ago
Rankings
Maintainers (1)
Dependencies
- neurogenomics/rworkflows master composite
- R >= 4.4.0 depends
- iSEE * depends
- SummarizedExperiment * imports
- TreeSummarizedExperiment * imports
- biomformat * imports
- iSEEtree * imports
- methods * imports
- mia * imports
- shiny * imports
- shinyjs * imports
- utils * imports
- BiocStyle * suggests
- RefManageR * suggests
- knitr * suggests
- remotes * suggests
- rmarkdown * suggests
- testthat >= 3.0.0 suggests
- rocker/shiny latest build