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MsBackendMgf

Mass Spectrometry Data Backend for Mascot Generic Format (mgf) Files

https://github.com/rformassspectrometry/msbackendmgf

Science Score: 36.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ✓
    Committers with academic emails
    2 of 5 committers (40.0%) from academic institutions
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (11.4%) to scientific vocabulary

Keywords from Contributors

bioconductor-package bioconductor mass-spectrometry metabolomics ontology gene mass-spectromtry spectra massbank annotation
Last synced: 10 months ago · JSON representation

Repository

Mass Spectrometry Data Backend for Mascot Generic Format (mgf) Files

Basic Info
Statistics
  • Stars: 5
  • Watchers: 6
  • Forks: 1
  • Open Issues: 1
  • Releases: 0
Created about 6 years ago · Last pushed about 1 year ago
Metadata Files
Readme Changelog

README.md

Mass Spectrometry Data Backend for Mascot Generic Format (mgf) Files

Project Status: Active – The project has reached a stable, usable state and is being actively developed. R-CMD-check-bioc codecov license years in bioc Ranking by downloads build release build devel

The MsBackendMgf package provides functionality to import and handle MS/MS spectrum data from Mascot Generic Format (mgf) files. The package defines the MsBackendMgf backend which can be used to import and use MS2 spectrum data from mgf files with the Spectra R package.

For more information see the package homepage.

Installation

The package can be installed with

r install.packages("BiocManager") BiocManager::install("MsBackendMgf")

Contributions

Contributions are highly welcome and should follow the contribution guidelines. Also, please check the coding style guidelines in the RforMassSpectrometry vignette.

Owner

  • Name: RforMassSpectrometry
  • Login: rformassspectrometry
  • Kind: organization
  • Email: maintainer@rformassspectrometry.org

R packages for mass spectrometry

GitHub Events

Total
  • Issues event: 2
  • Watch event: 1
  • Issue comment event: 7
  • Push event: 16
  • Pull request review event: 2
  • Pull request event: 6
  • Create event: 1
Last Year
  • Issues event: 2
  • Watch event: 1
  • Issue comment event: 7
  • Push event: 16
  • Pull request review event: 2
  • Pull request event: 6
  • Create event: 1

Committers

Last synced: over 2 years ago

All Time
  • Total Commits: 77
  • Total Committers: 5
  • Avg Commits per committer: 15.4
  • Development Distribution Score (DDS): 0.312
Past Year
  • Commits: 21
  • Committers: 3
  • Avg Commits per committer: 7.0
  • Development Distribution Score (DDS): 0.238
Top Committers
Name Email Commits
jorainer j****r@g****m 53
Laurent Gatto l****o@u****e 13
Nitesh Turaga n****a@g****m 6
michaelwitting m****g@h****e 3
J Wokaty j****y@s****u 2
Committer Domains (Top 20 + Academic)
sph.cuny.edu: 1 helmholtz-muenchen.de: 1 uclouvain.be: 1

Issues and Pull Requests

Last synced: 10 months ago

All Time
  • Total issues: 14
  • Total pull requests: 22
  • Average time to close issues: 2 months
  • Average time to close pull requests: 5 days
  • Total issue authors: 5
  • Total pull request authors: 4
  • Average comments per issue: 5.21
  • Average comments per pull request: 1.18
  • Merged pull requests: 20
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 1
  • Pull requests: 6
  • Average time to close issues: about 1 month
  • Average time to close pull requests: 9 days
  • Issue authors: 1
  • Pull request authors: 1
  • Average comments per issue: 8.0
  • Average comments per pull request: 0.0
  • Merged pull requests: 6
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • lgatto (5)
  • jorainer (5)
  • michaelwitting (2)
  • cbroeckl (1)
  • HijaziHassan (1)
Pull Request Authors
  • jorainer (18)
  • sgibb (3)
  • michaelwitting (2)
  • Adafede (1)
Top Labels
Issue Labels
enhancement (2) bug (1)
Pull Request Labels

Packages

  • Total packages: 1
  • Total downloads:
    • bioconductor 34,433 total
  • Total dependent packages: 3
  • Total dependent repositories: 0
  • Total versions: 5
  • Total maintainers: 1
bioconductor.org: MsBackendMgf

Mass Spectrometry Data Backend for Mascot Generic Format (mgf) Files

  • Versions: 5
  • Dependent Packages: 3
  • Dependent Repositories: 0
  • Downloads: 34,433 Total
Rankings
Dependent repos count: 0.0%
Dependent packages count: 0.0%
Average: 17.6%
Forks count: 18.4%
Stargazers count: 19.5%
Downloads: 50.2%
Maintainers (1)
maintainer@rformassspectrometry.org
Last synced: 11 months ago

Dependencies

DESCRIPTION cran
  • R >= 4.0 depends
  • Spectra >= 1.5.14 depends
  • BiocParallel * imports
  • IRanges * imports
  • MsCoreUtils * imports
  • S4Vectors * imports
  • methods * imports
  • stats * imports
  • BiocStyle >= 2.5.19 suggests
  • knitr >= 1.1.0 suggests
  • rmarkdown * suggests
  • roxygen2 * suggests
  • testthat * suggests
.github/workflows/check-bioc.yml actions
  • actions/cache v2 composite
  • actions/checkout v2 composite
  • actions/upload-artifact master composite
  • r-lib/actions/setup-pandoc v2 composite
  • r-lib/actions/setup-r v2 composite