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VDJdive

For code related to T cell repertoire analysis

https://github.com/kstreet13/vdjdive

Science Score: 23.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ○
    .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ✓
    Committers with academic emails
    3 of 8 committers (37.5%) from academic institutions
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (6.6%) to scientific vocabulary

Keywords from Contributors

bioconductor-packages gene grna-sequence immune-repertoire ontologies
Last synced: 11 months ago · JSON representation

Repository

For code related to T cell repertoire analysis

Basic Info
  • Host: GitHub
  • Owner: kstreet13
  • Language: R
  • Default Branch: devel
  • Size: 1.91 MB
Statistics
  • Stars: 7
  • Watchers: 4
  • Forks: 0
  • Open Issues: 2
  • Releases: 0
Created about 5 years ago · Last pushed over 1 year ago
Metadata Files
Readme

README.md

logo.png

VDJdive

R-CMD-check codecov <!-- badges: end -->

Installation

devtools::install_github('kstreet13/VDJdive')

Issues and bug reports

Please use https://github.com/kstreet13/VDJdive/issues to submit issues, bug reports, and comments.

Owner

  • Name: Kelly Street
  • Login: kstreet13
  • Kind: user
  • Location: Los Angeles, CA
  • Company: Keck School of Medicine of USC

Assistant Professor of Population and Public Health Sciences, Division of Biostatistics

GitHub Events

Total
  • Push event: 2
Last Year
  • Push event: 2

Committers

Last synced: over 2 years ago

All Time
  • Total Commits: 161
  • Total Committers: 8
  • Avg Commits per committer: 20.125
  • Development Distribution Score (DDS): 0.441
Past Year
  • Commits: 31
  • Committers: 6
  • Avg Commits per committer: 5.167
  • Development Distribution Score (DDS): 0.645
Top Committers
Name Email Commits
Kelly Street s****y@g****m 90
Kelly Street k****t@r****l 31
Mercedeh Movassagh m****h@d****u 13
Kelly Street k****t@K****l 11
Kelly Street k****t@K****u 7
jillbo1000 j****l@g****m 5
J Wokaty j****y@s****u 2
J Wokaty j****y 2
Committer Domains (Top 20 + Academic)
sph.cuny.edu: 1 kellys-imac.usc.edu: 1 ds.dfci.harvard.edu: 1

Issues and Pull Requests

Last synced: 11 months ago

All Time
  • Total issues: 2
  • Total pull requests: 1
  • Average time to close issues: N/A
  • Average time to close pull requests: less than a minute
  • Total issue authors: 2
  • Total pull request authors: 1
  • Average comments per issue: 0.5
  • Average comments per pull request: 0.0
  • Merged pull requests: 1
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 0
  • Pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Issue authors: 0
  • Pull request authors: 0
  • Average comments per issue: 0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • Moonbow11 (1)
  • apal6 (1)
Pull Request Authors
  • jillbo1000 (1)
Top Labels
Issue Labels
Pull Request Labels

Packages

  • Total packages: 1
  • Total downloads:
    • bioconductor 5,465 total
  • Total dependent packages: 0
  • Total dependent repositories: 0
  • Total versions: 5
  • Total maintainers: 1
bioconductor.org: VDJdive

Analysis Tools for 10X V(D)J Data

  • Versions: 5
  • Dependent Packages: 0
  • Dependent Repositories: 0
  • Downloads: 5,465 Total
Rankings
Dependent repos count: 0.0%
Dependent packages count: 0.0%
Stargazers count: 12.3%
Forks count: 19.8%
Average: 25.5%
Downloads: 95.5%
Maintainers (1)
street.kelly@gmail.com
Last synced: 11 months ago

Dependencies

DESCRIPTION cran
  • R >= 4.1 depends
  • BiocParallel * imports
  • IRanges * imports
  • Matrix * imports
  • RColorBrewer * imports
  • S4Vectors * imports
  • SingleCellExperiment * imports
  • SummarizedExperiment * imports
  • basilisk * imports
  • ggplot2 * imports
  • methods * imports
  • reticulate * imports
  • stats * imports
  • utils * imports
  • BiocStyle * suggests
  • breakaway * suggests
  • covr * suggests
  • knitr * suggests
  • rmarkdown * suggests
  • testthat * suggests
.github/workflows/check-bioc.yml actions
  • JamesIves/github-pages-deploy-action releases/v4 composite
  • actions/cache v3 composite
  • actions/checkout v3 composite
  • actions/upload-artifact master composite
  • docker/build-push-action v1 composite
  • r-lib/actions/setup-pandoc v2 composite
  • r-lib/actions/setup-r v2 composite