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beachmat

Clone of the Bioconductor repository for the beachmat package.

https://github.com/tatami-inc/beachmat

Science Score: 36.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ✓
    Committers with academic emails
    4 of 14 committers (28.6%) from academic institutions
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (4.7%) to scientific vocabulary

Keywords

bioconductor-package human-cell-atlas matrix-library

Keywords from Contributors

core-package single-cell u24ca289073 bioconductor gene gene-expression shiny transcriptomics bioinformatics rna-seq
Last synced: 9 months ago · JSON representation

Repository

Clone of the Bioconductor repository for the beachmat package.

Basic Info
Statistics
  • Stars: 5
  • Watchers: 3
  • Forks: 5
  • Open Issues: 5
  • Releases: 0
Topics
bioconductor-package human-cell-atlas matrix-library
Created almost 9 years ago · Last pushed 10 months ago
Metadata Files
Readme

README.md

beachmat: C++ API to R matrices

|Build|Status| |-----|----| | Bioc-release | | | Bioc-devel | |

This package provides a consistent C++ class interface for reading a variety of R matrix types, based on the tatami C++ library for matrix representations. Check out the developer guide on the Bioconductor landing page for more details.

Owner

  • Name: tatami libraries and extensions
  • Login: tatami-inc
  • Kind: organization

A variety of wild and wacky matrix representations in C++

GitHub Events

Total
  • Issues event: 10
  • Watch event: 1
  • Issue comment event: 18
  • Push event: 14
  • Pull request event: 2
  • Fork event: 2
Last Year
  • Issues event: 10
  • Watch event: 1
  • Issue comment event: 18
  • Push event: 14
  • Pull request event: 2
  • Fork event: 2

Committers

Last synced: over 2 years ago

All Time
  • Total Commits: 530
  • Total Committers: 14
  • Avg Commits per committer: 37.857
  • Development Distribution Score (DDS): 0.632
Past Year
  • Commits: 49
  • Committers: 4
  • Avg Commits per committer: 12.25
  • Development Distribution Score (DDS): 0.102
Top Committers
Name Email Commits
LTLA i****s@g****m 195
Aaron Lun a****n@c****k 189
Aaron Lun a****n@w****u 108
Nitesh Turaga n****a@g****m 14
Hervé Pagès h****s@f****g 7
Aaron Lun a****n@w****U 5
vobencha v****a@g****m 2
vobencha v****n@r****g 2
J Wokaty j****y 2
J Wokaty j****y@s****u 2
Martin Morgan m****n@f****g 1
Hervé Pagès h****b@g****m 1
Aaron Lun L****A 1
Peter Hickey p****y@g****m 1
Committer Domains (Top 20 + Academic)
wehi.edu.au: 2 fhcrc.org: 1 sph.cuny.edu: 1 roswellpark.org: 1 fredhutch.org: 1 cruk.cam.ac.uk: 1

Issues and Pull Requests

Last synced: 9 months ago

All Time
  • Total issues: 25
  • Total pull requests: 12
  • Average time to close issues: 7 days
  • Average time to close pull requests: 8 days
  • Total issue authors: 19
  • Total pull request authors: 4
  • Average comments per issue: 2.48
  • Average comments per pull request: 1.0
  • Merged pull requests: 10
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 9
  • Pull requests: 0
  • Average time to close issues: about 17 hours
  • Average time to close pull requests: N/A
  • Issue authors: 8
  • Pull request authors: 0
  • Average comments per issue: 1.67
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • LTLA (3)
  • grimbough (2)
  • drisso (2)
  • hpages (2)
  • GabrielHoffman (2)
  • mtmorgan (1)
  • wmacnair (1)
  • jmacdon (1)
  • slowkow (1)
  • yghorbal (1)
  • PeteHaitch (1)
  • RenJ-Feng (1)
  • sckinta (1)
  • cypranowska (1)
  • manoloff (1)
Pull Request Authors
  • LTLA (11)
  • PeteHaitch (2)
  • aboyoun (1)
  • grimbough (1)
  • hpages (1)
Top Labels
Issue Labels
Pull Request Labels

Packages

  • Total packages: 1
  • Total downloads:
    • bioconductor 1,346,234 total
  • Total dependent packages: 15
  • Total dependent repositories: 0
  • Total versions: 6
  • Total maintainers: 1
bioconductor.org: beachmat

Compiling Bioconductor to Handle Each Matrix Type

  • Versions: 6
  • Dependent Packages: 15
  • Dependent Repositories: 0
  • Downloads: 1,346,234 Total
Rankings
Dependent repos count: 0.0%
Downloads: 2.8%
Dependent packages count: 3.9%
Average: 8.0%
Forks count: 11.0%
Stargazers count: 22.1%
Maintainers (1)
infinite.monkeys.with.keyboards@gmail.com
Last synced: 10 months ago

Dependencies

DESCRIPTION cran
  • BiocGenerics * imports
  • DelayedArray >= 0.27.2 imports
  • Matrix * imports
  • Rcpp * imports
  • SparseArray * imports
  • methods * imports
  • BiocParallel * suggests
  • BiocStyle * suggests
  • HDF5Array * suggests
  • knitr * suggests
  • rcmdcheck * suggests
  • rmarkdown * suggests
  • testthat * suggests
inst/extensions/DESCRIPTION cran
  • DelayedArray * imports
  • Rcpp * imports
  • methods * imports
  • beachmat * suggests
  • devtools * suggests
  • testthat * suggests
inst/newtests/DESCRIPTION cran
  • Rcpp * imports
  • DelayedArray * suggests
  • Matrix * suggests
  • testthat * suggests
inst/testpkg/DESCRIPTION cran
  • BiocGenerics * imports
  • DelayedArray * imports
  • Rcpp * imports
  • testthat * imports
  • Matrix * suggests
  • beachmat * suggests