Data

Tools

Indexes

Applications

Experiments

Open Source Science

scRNAseqApp

single cell RNA-seq results report system

https://github.com/jianhong/scrnaseqapp

Science Score: 26.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ○
    Committers with academic emails
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (1.4%) to scientific vocabulary

Keywords

interactive-visualizations multiple-users shiny-apps single-cell-rna-seq
Last synced: 7 months ago · JSON representation

Repository

single cell RNA-seq results report system

Basic Info
Statistics
  • Stars: 5
  • Watchers: 1
  • Forks: 4
  • Open Issues: 0
  • Releases: 0
Topics
interactive-visualizations multiple-users shiny-apps single-cell-rna-seq
Created over 4 years ago · Last pushed 8 months ago
Metadata Files
Readme

README.md

scRNAseqApp

single cell RNA-seq results report system

Owner

  • Name: JIANHONG OU
  • Login: jianhong
  • Kind: user

GitHub Events

Total
  • Issues event: 2
  • Watch event: 1
  • Push event: 109
  • Create event: 1
Last Year
  • Issues event: 2
  • Watch event: 1
  • Push event: 109
  • Create event: 1

Committers

Last synced: over 2 years ago

All Time
  • Total Commits: 106
  • Total Committers: 2
  • Avg Commits per committer: 53.0
  • Development Distribution Score (DDS): 0.019
Past Year
  • Commits: 63
  • Committers: 2
  • Avg Commits per committer: 31.5
  • Development Distribution Score (DDS): 0.032
Top Committers
Name Email Commits
JIANHONG OU j****g 104
J Wokaty j****y 2

Issues and Pull Requests

Last synced: 7 months ago

All Time
  • Total issues: 4
  • Total pull requests: 0
  • Average time to close issues: 7 months
  • Average time to close pull requests: N/A
  • Total issue authors: 4
  • Total pull request authors: 0
  • Average comments per issue: 3.0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 1
  • Pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Issue authors: 1
  • Pull request authors: 0
  • Average comments per issue: 0.0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • siegelna (1)
  • Gesmira (1)
  • tuhulab (1)
  • jeroen (1)
Pull Request Authors
Top Labels
Issue Labels
Pull Request Labels

Packages

  • Total packages: 1
  • Total downloads:
    • bioconductor 5,922 total
  • Total dependent packages: 0
  • Total dependent repositories: 0
  • Total versions: 7
  • Total maintainers: 1
bioconductor.org: scRNAseqApp

A single-cell RNAseq Shiny app-package

  • Versions: 7
  • Dependent Packages: 0
  • Dependent Repositories: 0
  • Downloads: 5,922 Total
Rankings
Dependent repos count: 0.0%
Dependent packages count: 0.0%
Average: 32.1%
Downloads: 96.3%
Maintainers (1)
jianhong.ou@duke.edu
Last synced: 8 months ago

Dependencies

DESCRIPTION cran
  • R >= 4.2.0 depends
  • CellChat * enhances
  • SeuratWrappers * enhances
  • SingleR * enhances
  • SummarizedExperiment * enhances
  • celldex * enhances
  • future * enhances
  • monocle3 * enhances
  • tricycle * enhances
  • ComplexHeatmap * imports
  • DT * imports
  • RColorBrewer * imports
  • RefManageR * imports
  • S4Vectors * imports
  • Seurat * imports
  • SeuratObject * imports
  • SingleCellExperiment * imports
  • bibtex * imports
  • bslib * imports
  • circlize * imports
  • data.table * imports
  • ggdendro * imports
  • ggforce * imports
  • ggplot2 * imports
  • ggrepel * imports
  • ggridges * imports
  • grDevices * imports
  • grid * imports
  • gridExtra * imports
  • hdf5r * imports
  • htmltools * imports
  • jsonlite * imports
  • magrittr * imports
  • methods * imports
  • plotly * imports
  • scales * imports
  • scrypt * imports
  • shiny * imports
  • shinyhelper * imports
  • shinymanager * imports
  • slingshot * imports
  • stats * imports
  • tools * imports
  • utils * imports
  • xfun * imports
  • xml2 * imports
  • BiocStyle * suggests
  • knitr * suggests
  • rmarkdown * suggests
  • testthat * suggests