Science Score: 10.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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○codemeta.json file
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○.zenodo.json file
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○DOI references
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○Academic publication links
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✓Committers with academic emails
1 of 10 committers (10.0%) from academic institutions -
○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (8.1%) to scientific vocabulary
Keywords
Keywords from Contributors
Repository
QUBIC R Package
Basic Info
- Host: GitHub
- Owner: zy26
- License: other
- Language: C++
- Default Branch: devel
- Homepage: http://bioconductor.org/packages/QUBIC
- Size: 127 KB
Statistics
- Stars: 3
- Watchers: 2
- Forks: 5
- Open Issues: 0
- Releases: 0
Topics
Metadata Files
README.md
QUBIC
Desription
QUBIC is recognized as one of the best biclustering methods in terms of its efficiency and effetiveness in biological data interpretion. This package provides an R implementation of the QUBIC algorithm, with significantly improved efficiency and comprehensive functions.
Installation
Please follow the instructions mentioned in the URL: http://bioconductor.org/packages/QUBIC
To install the development version of QUBIC, you will need to install at least the following packages from CRAN
{r}
install.packages("biclust")
install.packages("Rcpp")
install.packages("RcppArmadillo")
source("http://bioconductor.org/biocLite.R") # install BiocInstaller
For Windows users, Rtools(https://cran.r-project.org/bin/windows/Rtools/) should also be installed.
Then,
{r}
install.packages("devtools")
devtools::install_github("zy26/QUBIC")
To draw heatmap and visualize network, the following packages should also be installed:
{r}
install.packages("qgraph")
install.packages("RcolorBrewer")
Vignette
You can find the tutorial for QUBIC at https://bioconductor.org/packages/release/bioc/vignettes/QUBIC/inst/doc/qubic_vignette.pdf
Owner
- Login: zy26
- Kind: user
- Repositories: 5
- Profile: https://github.com/zy26
GitHub Events
Total
Last Year
Committers
Last synced: over 2 years ago
Top Committers
| Name | Commits | |
|---|---|---|
| Yu Zhang | z****6@j****n | 15 |
| zy26 | z****6 | 12 |
| Herve Pages | h****s@f****g | 4 |
| Dan Tenenbaum | d****a@f****g | 4 |
| Nitesh Turaga | n****a@g****m | 4 |
| Hervé Pagès | h****s@f****g | 2 |
| vobencha | v****n@r****g | 2 |
| vobencha | v****a@g****m | 2 |
| LiNk-NY | m****9@g****m | 1 |
| Martin Morgan | m****n@f****g | 1 |
Committer Domains (Top 20 + Academic)
Packages
- Total packages: 1
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Total downloads:
- bioconductor 30,888 total
- Total dependent packages: 2
- Total dependent repositories: 0
- Total versions: 5
- Total maintainers: 1
bioconductor.org: QUBIC
An R package for qualitative biclustering in support of gene co-expression analyses
- Homepage: http://github.com/zy26/QUBIC
- Documentation: https://bioconductor.org/packages/release/bioc/vignettes/QUBIC/inst/doc/QUBIC.pdf
- License: CC BY-NC-ND 4.0 + file LICENSE
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Latest release: 1.36.0
published about 1 year ago