Science Score: 23.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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✓codemeta.json file
Found codemeta.json file -
○.zenodo.json file
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○DOI references
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○Academic publication links
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✓Committers with academic emails
5 of 16 committers (31.3%) from academic institutions -
○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (2.8%) to scientific vocabulary
Keywords
factor-analysis
mofa
multi-omics
Keywords from Contributors
bioconductor-package
gene
proteomics
single-cell-rna-seq
bioconductor
anndata
mudata
genomics
scrna-seq
ontology
Last synced: 6 months ago
·
JSON representation
Repository
Multi-Omics Factor Analysis
Basic Info
- Host: GitHub
- Owner: bioFAM
- License: lgpl-3.0
- Language: R
- Default Branch: master
- Homepage: https://biofam.github.io/MOFA2/
- Size: 162 MB
Statistics
- Stars: 346
- Watchers: 13
- Forks: 59
- Open Issues: 80
- Releases: 1
Topics
factor-analysis
mofa
multi-omics
Created over 8 years ago
· Last pushed over 1 year ago
Metadata Files
Readme
License
README.md
Multi-Omics Factor Analysis
MOFA is a factor analysis model that provides a general framework for the integration of multi-omic data sets in an unsupervised fashion.
Please visit our website for installation instructions, tutorials, and much more!
Owner
- Name: bioFAM
- Login: bioFAM
- Kind: organization
- Repositories: 9
- Profile: https://github.com/bioFAM
GitHub Events
Total
- Issues event: 11
- Watch event: 42
- Issue comment event: 19
- Pull request event: 1
- Pull request review event: 2
- Pull request review comment event: 2
- Fork event: 5
Last Year
- Issues event: 11
- Watch event: 42
- Issue comment event: 19
- Pull request event: 1
- Pull request review event: 2
- Pull request review comment event: 2
- Fork event: 5
Committers
Last synced: over 2 years ago
Top Committers
| Name | Commits | |
|---|---|---|
| rargelaguet | r****t@g****m | 598 |
| Danila Bredikhin | d****n@e****e | 418 |
| bv2 | b****n@g****m | 278 |
| damien.arnol | d****l@g****m | 255 |
| deloroy | y****o@e****r | 78 |
| Britta Velten | b****n@e****e | 15 |
| Danila | 3****a | 9 |
| Nitesh Turaga | n****a@g****m | 8 |
| Jan Gleixner | j****r@g****m | 7 |
| Danila | b****l@g****m | 3 |
| Jana Braunger | b****r@s****e | 2 |
| J Wokaty | j****y@s****u | 2 |
| Alan O'Callaghan | a****n@o****m | 1 |
| Damien Arnol | a****l@e****k | 1 |
| Mukta G. Palshikar | 3****3 | 1 |
| Hervé Pagès | h****b@g****m | 1 |
Committer Domains (Top 20 + Academic)
Issues and Pull Requests
Last synced: 6 months ago
All Time
- Total issues: 108
- Total pull requests: 13
- Average time to close issues: about 1 month
- Average time to close pull requests: about 2 months
- Total issue authors: 89
- Total pull request authors: 12
- Average comments per issue: 1.81
- Average comments per pull request: 2.15
- Merged pull requests: 7
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 16
- Pull requests: 1
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Issue authors: 16
- Pull request authors: 1
- Average comments per issue: 0.13
- Average comments per pull request: 0.0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- artur-sannikov (5)
- oliviaAB (4)
- frederikziebell (3)
- GabriellaS-K (2)
- ChristianRohde (2)
- mluciarr (2)
- geraldocantelli (2)
- danli349 (2)
- jiangfuqing (2)
- MonicaSteffi (2)
- nbutyrate (2)
- gmhhope (2)
- ahucke (1)
- velenjak1 (1)
- DarwinAwardWinner (1)
Pull Request Authors
- salix-d (3)
- willisbillis (2)
- MCorentin (2)
- bv2 (1)
- ilia-kats (1)
- gtca (1)
- muktapalshikar (1)
- alanocallaghan (1)
- frederikziebell (1)
- jan-glx (1)
- RiboRings (1)
- roramirezf (1)
Top Labels
Issue Labels
Pull Request Labels
Packages
- Total packages: 2
-
Total downloads:
- pypi 2,500 last-month
- bioconductor 38,772 total
-
Total dependent packages: 2
(may contain duplicates) -
Total dependent repositories: 6
(may contain duplicates) - Total versions: 29
- Total maintainers: 3
pypi.org: mofapy2
Multi-omics factor analysis
- Homepage: https:/biofam.github.io/MOFA2/
- Documentation: https://mofapy2.readthedocs.io/
- License: LGPL-3.0
-
Latest release: 0.7.2
published over 1 year ago
Rankings
Dependent packages count: 4.8%
Dependent repos count: 6.0%
Downloads: 7.7%
Average: 8.0%
Forks count: 9.6%
Stargazers count: 11.9%
Maintainers (2)
Last synced:
6 months ago
bioconductor.org: MOFA2
Multi-Omics Factor Analysis v2
- Homepage: https://biofam.github.io/MOFA2/index.html
- Documentation: https://bioconductor.org/packages/release/bioc/vignettes/MOFA2/inst/doc/MOFA2.pdf
- License: file LICENSE
-
Latest release: 1.18.0
published 10 months ago
Rankings
Dependent repos count: 0.0%
Dependent packages count: 0.0%
Stargazers count: 0.7%
Forks count: 1.0%
Average: 8.4%
Downloads: 40.3%
Maintainers (1)
Last synced:
6 months ago
Dependencies
DESCRIPTION
cran
- R >= 4.0 depends
- DelayedArray * imports
- HDF5Array * imports
- RColorBrewer * imports
- Rtsne * imports
- basilisk * imports
- corrplot * imports
- cowplot * imports
- dplyr * imports
- forcats * imports
- ggplot2 * imports
- ggrepel * imports
- grDevices * imports
- magrittr * imports
- methods * imports
- pheatmap * imports
- reshape2 * imports
- reticulate * imports
- rhdf5 * imports
- stats * imports
- stringi * imports
- tidyr * imports
- utils * imports
- uwot * imports
- BiocStyle * suggests
- GGally * suggests
- Matrix * suggests
- MultiAssayExperiment * suggests
- Seurat * suggests
- SingleCellExperiment * suggests
- SummarizedExperiment * suggests
- data.table * suggests
- foreach * suggests
- ggpubr * suggests
- ggrastr * suggests
- knitr * suggests
- markdown * suggests
- mvtnorm * suggests
- psych * suggests
- rmarkdown * suggests
- testthat * suggests
- tidyverse * suggests
setup.py
pypi
- argparse *
- dtw-python >=1.1.5
- h5py *
- numpy *
- pandas *
- scipy >=1.5.1
- sklearn *
Dockerfile
docker
- r-base 4.0.2 build