Science Score: 23.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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✓codemeta.json file
Found codemeta.json file -
○.zenodo.json file
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○DOI references
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○Academic publication links
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✓Committers with academic emails
2 of 5 committers (40.0%) from academic institutions -
○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (2.9%) to scientific vocabulary
Keywords from Contributors
bioconductor-package
gene
ontology
immune-repertoire
grna-sequence
proteomics
spatial-transcriptomics
heatmap
interactive-visualizations
orthologs
Last synced: 10 months ago
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JSON representation
Repository
TOP results by CONfident efFECT Sizes.
Basic Info
- Host: GitHub
- Owner: pfh
- License: lgpl-2.1
- Language: R
- Default Branch: master
- Homepage: https://bioconductor.org/packages/topconfects
- Size: 632 KB
Statistics
- Stars: 14
- Watchers: 2
- Forks: 1
- Open Issues: 2
- Releases: 4
Created over 9 years ago
· Last pushed over 1 year ago
Metadata Files
Readme
Changelog
License
README.md
Topconfects
TOP results by CONfident efFECT Size. Topconfects is intended for RNA-seq or microarray Differntial Expression analysis and similar, where we are interested in placing confidence bounds on many effect sizes--one per gene--from few samples.
Topconfects is now in Bioconductor. The github repository is for bleeding-edge development only.
Owner
- Name: Paul Harrison
- Login: pfh
- Kind: user
- Location: Monash University, Melbourne, Australia
- Repositories: 16
- Profile: https://github.com/pfh
GitHub Events
Total
- Push event: 5
Last Year
- Push event: 5
Committers
Last synced: over 2 years ago
Top Committers
| Name | Commits | |
|---|---|---|
| Paul Harrison | p****h@l****t | 65 |
| Nitesh Turaga | n****a@g****m | 14 |
| Paul Harrison | p****n@m****u | 11 |
| J Wokaty | j****y@s****u | 2 |
| J Wokaty | j****y | 2 |
Committer Domains (Top 20 + Academic)
Packages
- Total packages: 1
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Total downloads:
- bioconductor 16,824 total
- Total dependent packages: 3
- Total dependent repositories: 0
- Total versions: 5
- Total maintainers: 1
bioconductor.org: topconfects
Top Confident Effect Sizes
- Homepage: https://github.com/pfh/topconfects
- Documentation: https://bioconductor.org/packages/release/bioc/vignettes/topconfects/inst/doc/topconfects.pdf
- License: LGPL-2.1 | file LICENSE
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Latest release: 1.24.0
published about 1 year ago
Rankings
Dependent repos count: 0.0%
Stargazers count: 8.0%
Dependent packages count: 11.0%
Forks count: 18.4%
Average: 18.8%
Downloads: 56.8%
Maintainers (1)
Last synced:
11 months ago
Dependencies
DESCRIPTION
cran
- R >= 3.6.0 depends
- assertthat * imports
- ggplot2 * imports
- methods * imports
- stats * imports
- utils * imports
- AnnotationDbi * suggests
- BiocStyle * suggests
- DESeq2 * suggests
- NBPSeq * suggests
- ashr * suggests
- dplyr * suggests
- edgeR * suggests
- knitr * suggests
- limma * suggests
- org.At.tair.db * suggests
- readr * suggests
- reshape2 * suggests
- rmarkdown * suggests
- statmod * suggests
- testthat * suggests
- tidyr * suggests