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MetaboCoreUtils

Core utilities for metabolomics.

https://github.com/rformassspectrometry/metabocoreutils

Science Score: 36.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ✓
    Committers with academic emails
    3 of 13 committers (23.1%) from academic institutions
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (11.9%) to scientific vocabulary

Keywords

mass-spectrometry metabolomics

Keywords from Contributors

proteomics bioconductor-package bioconductor annotation gene mass-spectromtry ontology feature-detection peak-detection bioc
Last synced: 10 months ago · JSON representation

Repository

Core utilities for metabolomics.

Basic Info
Statistics
  • Stars: 9
  • Watchers: 7
  • Forks: 6
  • Open Issues: 8
  • Releases: 0
Topics
mass-spectrometry metabolomics
Created over 6 years ago · Last pushed about 1 year ago
Metadata Files
Readme Changelog

README.md

Low level functions for metabolomics data

Project Status: Active – The project has reached a stable, usable state and is being actively developed. R-CMD-check-bioc codecov license years in bioc Ranking by downloads build release build devel

MetaboCoreUtils defines metabolomics-related core functionality which is provided as low-level functions to allow a data structure-independent usage across various R packages.

For more information see the package homepage.

Installation

The package can be installed with

r install.packages("BiocManager") BiocManager::install("MetaboCoreUtils")

Contributions

Contributions are highly welcome and should follow the contribution guidelines. Also, please check the coding style guidelines in the RforMassSpectrometry vignette.

Owner

  • Name: RforMassSpectrometry
  • Login: rformassspectrometry
  • Kind: organization
  • Email: maintainer@rformassspectrometry.org

R packages for mass spectrometry

GitHub Events

Total
  • Watch event: 1
  • Push event: 10
  • Pull request review event: 1
  • Pull request event: 2
Last Year
  • Watch event: 1
  • Push event: 10
  • Pull request review event: 1
  • Pull request event: 2

Committers

Last synced: over 2 years ago

All Time
  • Total Commits: 186
  • Total Committers: 13
  • Avg Commits per committer: 14.308
  • Development Distribution Score (DDS): 0.527
Past Year
  • Commits: 36
  • Committers: 6
  • Avg Commits per committer: 6.0
  • Development Distribution Score (DDS): 0.722
Top Committers
Name Email Commits
jorainer j****r@g****m 88
Michael Witting m****g@h****e 30
Sebastian Gibb m****l@s****e 17
Philippine Louail 1****l 8
andreavicini a****i@m****t 8
Philippine Louail p****l@o****m 7
RogerGinBer 4****r 7
Nitesh Turaga n****a@g****m 6
LiesaSalzer l****r@w****e 6
meowcat M****s@e****h 3
J Wokaty j****y 2
Andrea Vicini a****i@e****u 2
J Wokaty j****y@s****u 2
Committer Domains (Top 20 + Academic)
sph.cuny.edu: 1 eurac.edu: 1 eawag.ch: 1 mail.polimi.it: 1 sebastiangibb.de: 1 helmholtz-muenchen.de: 1

Issues and Pull Requests

Last synced: 10 months ago

All Time
  • Total issues: 38
  • Total pull requests: 64
  • Average time to close issues: 6 months
  • Average time to close pull requests: 7 days
  • Total issue authors: 11
  • Total pull request authors: 9
  • Average comments per issue: 3.95
  • Average comments per pull request: 1.06
  • Merged pull requests: 57
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 0
  • Pull requests: 1
  • Average time to close issues: N/A
  • Average time to close pull requests: 8 minutes
  • Issue authors: 0
  • Pull request authors: 1
  • Average comments per issue: 0
  • Average comments per pull request: 0.0
  • Merged pull requests: 1
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • jorainer (14)
  • michaelwitting (6)
  • cbroeckl (2)
  • meowcat (2)
  • sgibb (2)
  • RogerGinBer (1)
  • toxintoxin (1)
  • lgatto (1)
  • Marievlm (1)
  • ThorstenGravert (1)
Pull Request Authors
  • jorainer (20)
  • michaelwitting (15)
  • philouail (7)
  • sgibb (6)
  • andreavicini (3)
  • jamesjiadazhan (2)
  • meowcat (1)
  • RogerGinBer (1)
  • LiesaSalzer (1)
Top Labels
Issue Labels
enhancement (4) bug (2) question (1)
Pull Request Labels
enhancement (4)

Packages

  • Total packages: 1
  • Total downloads:
    • bioconductor 80,914 total
  • Total dependent packages: 5
  • Total dependent repositories: 0
  • Total versions: 6
  • Total maintainers: 1
bioconductor.org: MetaboCoreUtils

Core Utils for Metabolomics Data

  • Versions: 6
  • Dependent Packages: 5
  • Dependent Repositories: 0
  • Downloads: 80,914 Total
Rankings
Dependent repos count: 0.0%
Dependent packages count: 0.0%
Forks count: 10.0%
Stargazers count: 14.9%
Average: 15.5%
Downloads: 52.5%
Maintainers (1)
Johannes.Rainer@eurac.edu
Last synced: 10 months ago

Dependencies

DESCRIPTION cran
  • R >= 4.0 depends
  • MsCoreUtils * imports
  • utils * imports
  • BiocStyle * suggests
  • knitr * suggests
  • rmarkdown * suggests
  • testthat * suggests
.github/workflows/check-bioc.yml actions
  • actions/cache v2 composite
  • actions/checkout v2 composite
  • actions/upload-artifact master composite
  • r-lib/actions/setup-pandoc master composite
  • r-lib/actions/setup-r master composite