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Recent Releases of rawDiag

rawDiag - ABRF R4Core

rawDiag version 0.0.41

Install

1. System Requirements

a Windows/Linux/MacOSX x64 platform

1.1 .NET Framework and R

  • https://www.mono-project.com/ (>4.0.22) for (Linux and MacOSX)
  • .NET Framework 4.5.1 or higher (Windows)
  • R (>4.0);
  • U.S. language setting on windows/linux/apple see issue 33

You can download and install the current R package.

run R (>= 4.0) and type

```{r}

install required packages

pkgs <- c('dplyr', 'hexbin', 'protViz', 'RSQLite', 'scales', 'tidyr', 'tidyverse', 'shiny') pkgs <- pkgs[(!pkgs %in% unique(installed.packages()[,'Package']))] if(length(pkgs) > 0){install.packages(pkgs)} ```

install rawDiag {r} install.packages('http://fgcz-ms.uzh.ch/~cpanse/rawDiag_0.0.41.tar.gz', repo=NULL)

it should run out of the box. A possible first code snippet is below

```{r} library(rawDiag) (rawfile <- file.path(path.package(package = 'rawDiag'), 'extdata', 'sample.raw')) system.time(RAW <- read.raw(file = rawfile)) dim(RAW) summary(RAW) PlotScanFrequency(RAW)

read the help page

browseVignettes("rawDiag") `` After Install **please send us an [Email, SUBJECTrawDiag package`](mailto:cp@fgcz.ethz.ch?SUBJECT=rawDiag%20package)**.

What kind of instrument data do you use?

If you still have problems, please let us know via Email, SUBJECT request help rawDiag package.

Output of R's function sessionInfo()

New features

  1. removed data used in our initial JPR publication (slim)

  2. refactored read.raw.info

  3. some code cosmetics for depreciated dplyr methods

- R
Published by cpanse about 5 years ago

rawDiag - slim

rawDiag version 0.0.38

Thank you for your interest in the rawDiag package.

please use the build package.

If you accept the Thermo License agreement

https://github.com/fgcz/rawDiag/blob/master/inst/docker/ThermoRawFileReader/RawFileReaderLicense.doc

Install

1. System Requirements

a Windows/Linux/MacOSX x64 platform

1.1 .NET Framework and R

  • https://www.mono-project.com/ (>4.0.22) for (Linux and MacOSX)
  • .NET Framework 4.5.1 or higher (Windows)
  • R (>4.0);
  • U.S. language setting on windows/linux/apple see issue 33

You can download and install the current R package.

run R (>= 4.0) and type

```{r}

install required packages

pkgs <- c('dplyr', 'hexbin', 'protViz', 'RSQLite', 'scales', 'tidyr', 'tidyverse', 'shiny') pkgs <- pkgs[(!pkgs %in% unique(installed.packages()[,'Package']))] if(length(pkgs) > 0){install.packages(pkgs)} ```

install rawDiag {r} install.packages('http://fgcz-ms.uzh.ch/~cpanse/rawDiag_0.0.38.tar.gz', repo=NULL)

it should run out of the box. A possible first code snippet is below

```{r} library(rawDiag) (rawfile <- file.path(path.package(package = 'rawDiag'), 'extdata', 'sample.raw')) system.time(RAW <- read.raw(file = rawfile)) dim(RAW) summary(RAW) PlotScanFrequency(RAW)

read the help page

browseVignettes("rawDiag") `` After Install **please send us an [Email, SUBJECTrawDiag package`](mailto:cp@fgcz.ethz.ch?SUBJECT=rawDiag%20package)**.

What kind of instrument data do you use?

If you still have problems, please let us know via Email, SUBJECT request help rawDiag package.

Output of R's function sessionInfo()

New features

  1. removed data used in our initial JPR publication

  2. refactored read.raw.info

- R
Published by cpanse almost 6 years ago

rawDiag - Proteomics Forum 2019

version 0.0.34

Thank you for your interest in the rawDiag package.

please use the build package.

If you accept the Thermo License agreement

https://github.com/fgcz/rawDiag/blob/master/inst/docker/ThermoRawFileReader/RawFileReaderLicense.doc

You can download and install the current R package.

run R (>= 3.5.1) and type

```{r}

install required packages

pkgs <- c('dplyr', 'hexbin', 'protViz', 'RSQLite', 'scales', 'tidyr', 'tidyverse', 'shiny') pkgs <- pkgs[(!pkgs %in% unique(installed.packages()[,'Package']))] if(length(pkgs) > 0){install.packages(pkgs)} ```

{r} install.packages('http://fgcz-ms.uzh.ch/~cpanse/rawDiag_0.0.34.tar.gz', repo=NULL)

it should run out of the box. A possible first code snippet is below

```{r} library(rawDiag) (rawfile <- file.path(path.package(package = 'rawDiag'), 'extdata', 'sample.raw')) system.time(RAW <- read.raw(file = rawfile)) dim(RAW) summary(RAW) PlotScanFrequency(RAW)

read the help page

?read.raw ```

After Install please send us an Email, SUBJECT rawDiag package.

What kind of instrument data do you use?

If you still have problems, please let us know via Email, SUBJECT request help rawDiag package.

- R
Published by cpanse about 7 years ago

rawDiag - Manuscript ID: pr-2018-001736.R1.

version 0.0.3

{sh} zip rawDiag.zip rawDiag.Rnw rawDiag.tex rawDiag.bib graphics/*

- R
Published by cpanse almost 8 years ago

rawDiag - Manuscript ID: pr-2018-001736.

- R
Published by cpanse about 8 years ago