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rawDiag

Brings Orbitrap mass spectrometry data to life; multi-platform, fast and colorful R package

https://github.com/fgcz/rawdiag

Science Score: 26.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ○
    .zenodo.json file
  • ✓
    DOI references
    Found 3 DOI reference(s) in README
  • ○
    Academic publication links
  • ○
    Academic email domains
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (5.3%) to scientific vocabulary

Keywords

fast mass-spectrometry multiplatform orbitrap r rpackage visualization
Last synced: 6 months ago · JSON representation

Repository

Brings Orbitrap mass spectrometry data to life; multi-platform, fast and colorful R package

Basic Info
Statistics
  • Stars: 36
  • Watchers: 5
  • Forks: 11
  • Open Issues: 39
  • Releases: 5
Topics
fast mass-spectrometry multiplatform orbitrap r rpackage visualization
Created almost 8 years ago · Last pushed almost 2 years ago
Metadata Files
Readme Changelog

README.md

JPR

rawDiag

octopussy

an R package supporting rational LC-MS method optimization for bottom-up proteomics on multiple OS platforms

main features:

  1. multiplatform and fast reading through using The New RawFileReader from Thermo Fisher Scientific.
  2. uses latest visualization generation through using Rs ggplot2 package.
  3. provides an R interface to your instrument raw data.
  4. ships with an example shiny application.

Owner

  • Name: Functional Genomics Center UZH|ETH Zurich
  • Login: fgcz
  • Kind: organization
  • Email: protinf@fgcz.ethz.ch
  • Location: Switzerland

proteome informatics FGCZ

GitHub Events

Total
Last Year

Issues and Pull Requests

Last synced: 9 months ago

All Time
  • Total issues: 83
  • Total pull requests: 2
  • Average time to close issues: about 1 month
  • Average time to close pull requests: 5 months
  • Total issue authors: 18
  • Total pull request authors: 1
  • Average comments per issue: 2.75
  • Average comments per pull request: 0.0
  • Merged pull requests: 2
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 0
  • Pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Issue authors: 0
  • Pull request authors: 0
  • Average comments per issue: 0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • cpanse (41)
  • tobiasko (10)
  • BerndMaier (3)
  • lfnothias (3)
  • dzolg (3)
  • jjGG (3)
  • pisistrato (1)
  • 3H2ORZ (1)
  • rcastelo (1)
  • millerlehman (1)
  • joerg-b (1)
  • breidan (1)
  • viviantra (1)
  • David-Degnan (1)
  • NicolasEsk (1)
Pull Request Authors
  • lars20070 (2)
Top Labels
Issue Labels
enhancement (8) testing (7) bug (4) question (4) wontfix (1) good first issue (1)
Pull Request Labels

Packages

  • Total packages: 1
  • Total downloads:
    • bioconductor 3,523 total
  • Total dependent packages: 0
  • Total dependent repositories: 0
  • Total versions: 4
  • Total maintainers: 1
bioconductor.org: rawDiag

Brings Orbitrap Mass Spectrometry Data to Life; Fast and Colorful

  • Versions: 4
  • Dependent Packages: 0
  • Dependent Repositories: 0
  • Downloads: 3,523 Total
Rankings
Dependent repos count: 0.0%
Dependent packages count: 31.3%
Average: 43.0%
Downloads: 97.7%
Maintainers (1)
cp@fgcz.ethz.ch
Last synced: 6 months ago

Dependencies

DESCRIPTION cran
  • R >= 4.0 depends
  • methods * depends
  • RSQLite * imports
  • dplyr * imports
  • ggplot2 >= 2.2 imports
  • hexbin * imports
  • magrittr * imports
  • parallel * imports
  • protViz >= 0.6 imports
  • scales * imports
  • tidyr * imports
  • tidyverse * imports
  • yaml * imports
  • knitr * suggests
  • lattice * suggests
  • testthat * suggests