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hoodscanR

https://github.com/davislaboratory/hoodscanr

Science Score: 26.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ○
    Academic email domains
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (6.4%) to scientific vocabulary
Last synced: 10 months ago · JSON representation

Repository

Basic Info
Statistics
  • Stars: 8
  • Watchers: 5
  • Forks: 0
  • Open Issues: 0
  • Releases: 0
Created almost 3 years ago · Last pushed 11 months ago
Metadata Files
Readme Changelog License

README.md

hoodscanR: Cellular neighborhoods scanning from spatial transcriptomics data in R

R-CMD-check Coverage status

Install released version from Bioconductor

``` if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")

BiocManager::install("hoodscanR") ```

Install development version from GitHub

library(devtools) devtools::install_github("DavisLaboratory/hoodscanR")

Owner

  • Name: Davis Laboratory
  • Login: DavisLaboratory
  • Kind: organization
  • Location: Melbourne, Australia

computational systems biology of cancer

GitHub Events

Total
  • Watch event: 3
  • Issue comment event: 1
  • Push event: 8
Last Year
  • Watch event: 3
  • Issue comment event: 1
  • Push event: 8

Issues and Pull Requests

Last synced: 11 months ago

All Time
  • Total issues: 1
  • Total pull requests: 0
  • Average time to close issues: 4 months
  • Average time to close pull requests: N/A
  • Total issue authors: 1
  • Total pull request authors: 0
  • Average comments per issue: 2.0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 1
  • Pull requests: 0
  • Average time to close issues: 4 months
  • Average time to close pull requests: N/A
  • Issue authors: 1
  • Pull request authors: 0
  • Average comments per issue: 2.0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • HelenaLC (1)
Pull Request Authors
Top Labels
Issue Labels
Pull Request Labels

Packages

  • Total packages: 1
  • Total downloads:
    • bioconductor 2,424 total
  • Total dependent packages: 0
  • Total dependent repositories: 0
  • Total versions: 2
  • Total maintainers: 1
bioconductor.org: hoodscanR

Spatial cellular neighbourhood scanning in R

  • Versions: 2
  • Dependent Packages: 0
  • Dependent Repositories: 0
  • Downloads: 2,424 Total
Rankings
Dependent repos count: 0.0%
Forks count: 30.1%
Dependent packages count: 31.7%
Stargazers count: 36.9%
Average: 39.3%
Downloads: 97.9%
Maintainers (1)
liu.n@wehi.edu.au
Last synced: over 1 year ago

Dependencies

.github/workflows/R-CMD-check.yaml actions
  • actions/cache v2 composite
  • actions/checkout v2 composite
  • actions/upload-artifact master composite
  • docker/build-push-action v1 composite
  • r-lib/actions/setup-pandoc v2-branch composite
  • r-lib/actions/setup-r v2-branch composite
DESCRIPTION cran
  • R >= 4.3 depends
  • ComplexHeatmap * imports
  • RANN * imports
  • Rcpp >= 1.0.9 imports
  • S4Vectors * imports
  • SpatialExperiment * imports
  • SummarizedExperiment * imports
  • circlize * imports
  • dplyr * imports
  • ggplot2 * imports
  • grid * imports
  • knitr * imports
  • methods * imports
  • rlang * imports
  • rmarkdown * imports
  • scico * imports
  • stats * imports
  • tibble * imports
  • tidyr * imports
  • utils * imports
  • testthat >= 3.0.0 suggests