Science Score: 23.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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○codemeta.json file
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○.zenodo.json file
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✓DOI references
Found 2 DOI reference(s) in README -
○Academic publication links
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✓Committers with academic emails
1 of 3 committers (33.3%) from academic institutions -
○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (6.2%) to scientific vocabulary
Keywords
Repository
Negative Binomial Additive Model for RNASeq Data
Basic Info
- Host: GitHub
- Owner: reese3928
- Language: R
- Default Branch: master
- Homepage: https://bioconductor.org/packages/release/bioc/html/NBAMSeq.html
- Size: 46.9 KB
Statistics
- Stars: 2
- Watchers: 1
- Forks: 1
- Open Issues: 1
- Releases: 0
Topics
Metadata Files
README.md
NBAMSeq
NBAMSeq is a Bioconductor package for differential expression analysis based on negative binomial additive model.
The Bioconductor package can be found here.
The Bioconductor package vignette can be found here.
The NBAMSeq paper can be found here.
Package installation
{r}
if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager")
BiocManager::install("NBAMSeq")
Citation
Ren, X., & Kuan, P. F. (2020). Negative binomial additive model for RNA-Seq data analysis. BMC Bioinformatics, 21(1), 1-15.
@article{ren2020negative,
title={Negative binomial additive model for RNA-Seq data analysis},
author={Ren, Xu and Kuan, Pei-Fen},
journal={BMC Bioinformatics},
volume={21},
number={1},
pages={1--15},
year={2020},
publisher={BioMed Central}
}
Owner
- Name: Xu Ren
- Login: reese3928
- Kind: user
- Repositories: 3
- Profile: https://github.com/reese3928
Staying at home.
GitHub Events
Total
Last Year
Committers
Last synced: over 2 years ago
Top Committers
| Name | Commits | |
|---|---|---|
| Xu Ren | x****n@s****u | 18 |
| Nitesh Turaga | n****a@g****m | 8 |
| Xu Ren | x****0@g****m | 3 |
Committer Domains (Top 20 + Academic)
Issues and Pull Requests
Last synced: 6 months ago
All Time
- Total issues: 1
- Total pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Total issue authors: 1
- Total pull request authors: 0
- Average comments per issue: 1.0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 0
- Pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Issue authors: 0
- Pull request authors: 0
- Average comments per issue: 0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- pamonlan (1)
Pull Request Authors
Top Labels
Issue Labels
Pull Request Labels
Packages
- Total packages: 1
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Total downloads:
- bioconductor 11,049 total
- Total dependent packages: 0
- Total dependent repositories: 0
- Total versions: 5
- Total maintainers: 1
bioconductor.org: NBAMSeq
Negative Binomial Additive Model for RNA-Seq Data
- Homepage: https://github.com/reese3928/NBAMSeq
- Documentation: https://bioconductor.org/packages/release/bioc/vignettes/NBAMSeq/inst/doc/NBAMSeq.pdf
- License: GPL-2
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Latest release: 1.24.1
published 9 months ago
Rankings
Maintainers (1)
Dependencies
- R >= 3.6 depends
- S4Vectors * depends
- SummarizedExperiment * depends
- BiocParallel * imports
- DESeq2 * imports
- genefilter * imports
- methods * imports
- mgcv >= 1.8 imports
- stats * imports
- ggplot2 * suggests
- knitr * suggests
- rmarkdown * suggests
- testthat * suggests