CancerSubtypes
Science Score: 13.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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○codemeta.json file
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○.zenodo.json file
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✓DOI references
Found 8 DOI reference(s) in README -
○Academic publication links
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○Committers with academic emails
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○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (10.3%) to scientific vocabulary
Keywords from Contributors
Repository
Basic Info
- Host: GitHub
- Owner: taoshengxu
- Language: R
- Default Branch: master
- Size: 3.32 MB
Statistics
- Stars: 14
- Watchers: 1
- Forks: 6
- Open Issues: 6
- Releases: 0
Metadata Files
README.md
CancerSubtypes: an R/Bioconductor package for molecular cancer subtype identification, validation, and visualization
The R/Bioconductor package CancerSubtypes integrates the current common computational biology methods for cancer subtypes identification and provides a standardized framework for cancer subtype analysis based multi-omics data, such as gene expression, miRNA expression, DNA methylation and others.
Installing CancerSubtypes
```{r,eval=FALSE,warning=FALSE,message=FALSE} devtools::install_github("taoshengxu/CancerSubtypes")
```
Manual
Tutorial and examples can be found here.
Citation
Please cite the following article when using CancerSubtypes:
Xu, T. et al. CancerSubtypes: an R/Bioconductor package for molecular cancer subtype identification, validation, and visualization. Bioinformatics (2017) doi:10.1093/bioinformatics/btx378.
Owner
- Name: Taosheng Xu
- Login: taoshengxu
- Kind: user
- Repositories: 2
- Profile: https://github.com/taoshengxu
GitHub Events
Total
- Watch event: 2
Last Year
- Watch event: 2
Committers
Last synced: almost 3 years ago
Top Committers
| Name | Commits | |
|---|---|---|
| Taosheng Xu | t****x@g****m | 16 |
| Nitesh Turaga | n****a@g****m | 8 |
| Herve Pages | h****s@f****g | 4 |
| Hervé Pagès | h****s@f****g | 2 |
| vobencha | v****n@r****g | 2 |
| vobencha | v****a@g****m | 2 |
| Martin Morgan | m****n@f****g | 1 |
Committer Domains (Top 20 + Academic)
Packages
- Total packages: 1
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Total downloads:
- bioconductor 21,730 total
- Total dependent packages: 0
- Total dependent repositories: 0
- Total versions: 5
- Total maintainers: 1
bioconductor.org: CancerSubtypes
Cancer subtypes identification, validation and visualization based on multiple genomic data sets
- Homepage: https://github.com/taoshengxu/CancerSubtypes
- Documentation: https://bioconductor.org/packages/release/bioc/vignettes/CancerSubtypes/inst/doc/CancerSubtypes.pdf
- License: GPL (>= 2)
- Status: removed
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Latest release: 1.30.3
published almost 2 years ago
Rankings
Maintainers (1)
Dependencies
- NMF * depends
- R >= 4.0 depends
- sigclust * depends
- ConsensusClusterPlus * imports
- cluster * imports
- grDevices * imports
- iCluster * imports
- impute * imports
- limma * imports
- survival * imports
- BiocGenerics * suggests
- RTCGA.mRNA * suggests
- knitr * suggests
- rmarkdown * suggests