TFBSTools
Software Package for Transcription Factor Binding Site (TFBS) Analysis
Science Score: 23.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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✓codemeta.json file
Found codemeta.json file -
○.zenodo.json file
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○DOI references
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○Academic publication links
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✓Committers with academic emails
2 of 14 committers (14.3%) from academic institutions -
○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (5.3%) to scientific vocabulary
Keywords from Contributors
bioconductor-packages
proteomics
microscopy
fluorescence
particles
core-package
tracking
rhdf5
hdf5
bioc
Last synced: 10 months ago
·
JSON representation
Repository
Software Package for Transcription Factor Binding Site (TFBS) Analysis
Statistics
- Stars: 30
- Watchers: 4
- Forks: 11
- Open Issues: 7
- Releases: 0
Created over 10 years ago
· Last pushed over 1 year ago
Metadata Files
Readme
Changelog
README.md
TFBSTools
Software Package for Transcription Factor Binding Site (TFBS) Analysis
Installation of the stable version of TFBSTools from Bioconductor
R
if (!requireNamespace("BiocManager", quietly=TRUE))
install.packages("BiocManager")
BiocManager::install("TFBSTools")
Installation of the development version of TFBSTools from github
Prerequsite:
- Mac: Install "Command Line Tools" via
gccon terminal - Linux: Install a compiler and various development libraries (details vary across different flavors of Linux).
- Windows: Install Rtools.
R
devtools::install_github("ge11232002/TFBSTools")
Owner
- Name: Ge Tan
- Login: ge11232002
- Kind: user
- Location: Basel
- Company: Novartis Institute of Biomedical Research
- Repositories: 6
- Profile: https://github.com/ge11232002
GitHub Events
Total
- Watch event: 5
- Push event: 5
- Pull request event: 2
- Create event: 1
Last Year
- Watch event: 5
- Push event: 5
- Pull request event: 2
- Create event: 1
Committers
Last synced: about 2 years ago
Top Committers
| Name | Commits | |
|---|---|---|
| Ge Tan | g****n@m****m | 213 |
| Ge Tan | g****9@i****k | 57 |
| Dan Tenenbaum | d****a@f****g | 14 |
| Nitesh Turaga | n****a@g****m | 10 |
| Herve Pages | h****s@f****g | 8 |
| da-bar | d****1@g****m | 3 |
| Damir | d****c@i****k | 2 |
| Ge Tan | 1****9@q****m | 2 |
| Hervé Pagès | h****s@f****g | 2 |
| vobencha | v****n@r****g | 2 |
| vobencha | v****a@g****m | 2 |
| LiNk-NY | m****9@g****m | 1 |
| Marc Carlson | m****n@f****g | 1 |
| Kai Aragaki | 7****i | 1 |
Committer Domains (Top 20 + Academic)
Packages
- Total packages: 1
-
Total downloads:
- bioconductor 401,081 total
- Total dependent packages: 17
- Total dependent repositories: 0
- Total versions: 5
- Total maintainers: 1
bioconductor.org: TFBSTools
Software Package for Transcription Factor Binding Site (TFBS) Analysis
- Homepage: https://github.com/ge11232002/TFBSTools
- Documentation: https://bioconductor.org/packages/release/bioc/vignettes/TFBSTools/inst/doc/TFBSTools.pdf
- License: GPL-2
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Latest release: 1.46.0
published about 1 year ago
Rankings
Dependent repos count: 0.0%
Dependent packages count: 3.5%
Average: 4.5%
Downloads: 5.8%
Stargazers count: 6.5%
Forks count: 6.8%
Maintainers (1)
Last synced:
11 months ago
Dependencies
DESCRIPTION
cran
- R >= 3.2.2 depends
- BSgenome >= 1.36.3 imports
- Biobase >= 2.28 imports
- BiocGenerics >= 0.14.0 imports
- BiocParallel >= 1.2.21 imports
- Biostrings >= 2.36.4 imports
- CNEr >= 1.4.0 imports
- DBI >= 0.6 imports
- DirichletMultinomial >= 1.10.0 imports
- GenomeInfoDb >= 1.6.1 imports
- GenomicRanges >= 1.20.6 imports
- IRanges >= 2.2.7 imports
- RSQLite >= 1.0.0 imports
- S4Vectors >= 0.9.25 imports
- TFMPvalue >= 0.0.5 imports
- XML >= 3.98 imports
- XVector >= 0.8.0 imports
- caTools >= 1.17.1 imports
- grid * imports
- gtools >= 3.5.0 imports
- methods * imports
- parallel * imports
- rtracklayer >= 1.28.10 imports
- seqLogo >= 1.34.0 imports
- BiocStyle >= 1.7.7 suggests
- JASPAR2014 >= 1.4.0 suggests
- JASPAR2016 >= 1.0.0 suggests
- JASPAR2018 >= 1.0.0 suggests
- knitr >= 1.11 suggests
- rmarkdown * suggests
- testthat * suggests