Science Score: 36.0%
This score indicates how likely this project is to be science-related based on various indicators:
-
○CITATION.cff file
-
✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
○DOI references
-
○Academic publication links
-
✓Committers with academic emails
4 of 13 committers (30.8%) from academic institutions -
○Institutional organization owner
-
○JOSS paper metadata
-
○Scientific vocabulary similarity
Low similarity (11.6%) to scientific vocabulary
Keywords from Contributors
Repository
Out-of-core statistical computing and signal processing
Basic Info
- Host: GitHub
- Owner: kuwisdelu
- License: artistic-2.0
- Language: R
- Default Branch: devel
- Homepage: http://www.cardinalmsi.org
- Size: 3.29 MB
Statistics
- Stars: 57
- Watchers: 4
- Forks: 5
- Open Issues: 10
- Releases: 3
Metadata Files
README.md
matter
Out-of-core statistical computing and signal processing
Toolbox for larger-than-memory scientific computing and visualization, providing efficient out-of-core data structures using files or shared memory, for dense and sparse vectors, matrices, and arrays, with applications to nonuniformly sampled signals and images.
Description
The Matter package provides flexible data structures for out-of-memory computing on dense and sparse arrays, with specialized features designed specifically for computing on nonuniform signals such as mass spectra and other spectral data, as well as hyperspectral images.
Matter 2 has been updated to provide a more robust C++ backend to out-of-memory matter objects, along with a completely new implementation of sparse arrays. Tools for signal processing, dimension reduction, and data visualization are also provided.
User Installation
Bioconductor Release
Matter can be installed via the BiocManager package.
This is the recommended installation method.
```{r install, eval=FALSE} if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")
BiocManager::install("matter") ```
The same function can be used to update Matter and other Bioconductor packages.
Once installed, Matter can be loaded with library():
{r library, eval=FALSE}
library(matter)
Github Release
Matter can also be installed via the remotes package.
```{r install, eval=FALSE} if (!require("remotes", quietly = TRUE)) install.packages("remotes")
remotes::installgithub("kuwisdelu/matter", ref=remotes::githubrelease()) ```
Previous releases can be installed by specifying the exact version.
{r library, eval=FALSE}
remotes::install_github("kuwisdelu/matter@v2.6.2")
Developer Installation
Bioconductor Devel
The Bioconductor development version of matter can also be installed via the BiocManager package.
{r install, eval=FALSE}
BiocManager::install("matter", version="devel")
This version is unstable and should not be used for critical work. However, it is typically more stable than Github devel.
This version should typically pass R CMD check without errors.
Github Devel
The most cutting edge version of Matter can be installed from Github via the remotes package.
```{r install, eval=FALSE} if (!require("remotes", quietly = TRUE)) install.packages("remotes")
remotes::install_github("kuwisdelu/matter") ```
This version is unstable and only recommended for developers. It should not be used for critical work.
Owner
- Name: Kylie Bemis
- Login: kuwisdelu
- Kind: user
- Location: Boston, MA
- Company: Northeastern University
- Website: https://kuwisdelu.github.io
- Repositories: 22
- Profile: https://github.com/kuwisdelu
Assistant Teaching Professor at Northeastern University. Lead developer of Cardinal MSI R package.
GitHub Events
Total
- Create event: 2
- Release event: 1
- Issues event: 10
- Watch event: 4
- Issue comment event: 12
- Push event: 13
- Pull request event: 2
- Fork event: 1
Last Year
- Create event: 2
- Release event: 1
- Issues event: 10
- Watch event: 4
- Issue comment event: 12
- Push event: 13
- Pull request event: 2
- Fork event: 1
Committers
Last synced: over 2 years ago
Top Committers
| Name | Commits | |
|---|---|---|
| kuwisdelu | k****s@n****u | 540 |
| Kyle D. Bemis | k****s@p****u | 17 |
| Nitesh Turaga | n****a@g****m | 14 |
| kuwisdelu | k****u@n****u | 5 |
| Herve Pages | h****s@f****g | 5 |
| Ulf Köther | p****t@w****o | 5 |
| Kuwisdelu | k****u@E****l | 2 |
| Hervé Pagès | h****s@f****g | 2 |
| vobencha | v****n@r****g | 2 |
| vobencha | v****a@g****m | 2 |
| J Wokaty | j****y | 2 |
| J Wokaty | j****y@s****u | 2 |
| Martin Morgan | m****n@f****g | 1 |
Committer Domains (Top 20 + Academic)
Issues and Pull Requests
Last synced: 10 months ago
All Time
- Total issues: 18
- Total pull requests: 4
- Average time to close issues: 8 months
- Average time to close pull requests: 5 months
- Total issue authors: 11
- Total pull request authors: 4
- Average comments per issue: 1.72
- Average comments per pull request: 0.25
- Merged pull requests: 3
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 2
- Pull requests: 1
- Average time to close issues: 6 months
- Average time to close pull requests: about 1 month
- Issue authors: 2
- Pull request authors: 1
- Average comments per issue: 3.0
- Average comments per pull request: 0.0
- Merged pull requests: 1
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- kuwisdelu (19)
- PeteHaitch (6)
- EBRogers (1)
- iaaaka (1)
- MASHUOA (1)
- xiaodaigh (1)
- shaman-yellow (1)
- simplefywoo (1)
- MatthewOGoodman (1)
- vikram-rawat (1)
- mciach (1)
- rromoli (1)
- daniel-rodak (1)
Pull Request Authors
- hoxo-m (1)
- PeteHaitch (1)
- Woosah (1)
- mciach (1)
Top Labels
Issue Labels
Pull Request Labels
Packages
- Total packages: 1
-
Total downloads:
- bioconductor 27,613 total
- Total dependent packages: 2
- Total dependent repositories: 0
- Total versions: 9
- Total maintainers: 1
bioconductor.org: matter
Out-of-core statistical computing and signal processing
- Homepage: https://github.com/kuwisdelu/matter
- Documentation: https://bioconductor.org/packages/release/bioc/vignettes/matter/inst/doc/matter.pdf
- License: Artistic-2.0 | file LICENSE
-
Latest release: 2.10.0
published about 1 year ago
Rankings
Maintainers (1)
Dependencies
- BiocParallel * depends
- Matrix * depends
- R >= 3.5 depends
- biglm * depends
- methods * depends
- stats * depends
- BiocGenerics * imports
- ProtGenerics * imports
- digest * imports
- irlba * imports
- utils * imports
- BiocStyle * suggests
- testthat * suggests