RTCGAToolbox
Science Score: 36.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
○DOI references
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○Academic publication links
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✓Committers with academic emails
5 of 25 committers (20.0%) from academic institutions -
○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (0.7%) to scientific vocabulary
Keywords from Contributors
bioconductor-package
genomics
gene
bioconductor
bioinformatics
core-package
metabolomics
u24ca289073
mass-spectrometry
proteomics
Last synced: 10 months ago
·
JSON representation
Repository
Basic Info
- Host: GitHub
- Owner: mksamur
- Language: R
- Default Branch: master
- Size: 10.1 MB
Statistics
- Stars: 18
- Watchers: 4
- Forks: 12
- Open Issues: 2
- Releases: 0
Created about 12 years ago
· Last pushed about 1 year ago
Metadata Files
Readme
Changelog
README.md
RTCGAToolbox
Please visit http://mksamur.github.io/RTCGAToolbox/ or check vignette for more details!
Owner
- Login: mksamur
- Kind: user
- Repositories: 5
- Profile: https://github.com/mksamur
GitHub Events
Total
- Watch event: 1
- Delete event: 1
- Push event: 7
- Create event: 3
Last Year
- Watch event: 1
- Delete event: 1
- Push event: 7
- Create event: 3
Committers
Last synced: about 2 years ago
Top Committers
| Name | Commits | |
|---|---|---|
| LiNk-NY | m****9@g****m | 303 |
| LiNk-NY | m****z@r****g | 69 |
| Mehmet Kemal Samur | m****r@g****m | 43 |
| mksamur | m****t@M****l | 18 |
| Nitesh Turaga | n****a@g****m | 14 |
| Dan Tenenbaum | d****a@f****g | 6 |
| Mehmet Kemal Samur | s****r@j****u | 5 |
| aaronwolen | a****n@w****m | 5 |
| schifferl | l****s@L****l | 4 |
| Levi Waldron | l****h@g****m | 4 |
| J Wokaty | j****y@s****u | 4 |
| Herve Pages | h****s@f****g | 4 |
| lwaldron | l****n@h****u | 3 |
| Hervé Pagès | h****s@f****g | 3 |
| J Wokaty | j****y | 2 |
| Marcel Ramos | L****Y | 2 |
| lgeistlinger | l****r@s****u | 2 |
| mksamur | m****t@m****u | 2 |
| vobencha | v****n@r****g | 2 |
| vobencha | v****a@g****m | 2 |
| Bioconductor Git-SVN Bridge | b****c@b****g | 1 |
| Marcin Kosiński | m****i@g****m | 1 |
| Martin Morgan | m****n@f****g | 1 |
| Sonali Arora | s****a@f****g | 1 |
| mherberg | m****g@g****m | 1 |
Committer Domains (Top 20 + Academic)
fhcrc.org: 4
sph.cuny.edu: 2
roswellpark.org: 2
bioconductor.org: 1
mehmets-mbp.dfci.harvard.edu: 1
fredhutch.org: 1
hunter.cuny.edu: 1
wolen.com: 1
jimmy.harvard.edu: 1
Issues and Pull Requests
Last synced: 10 months ago
All Time
- Total issues: 0
- Total pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Total issue authors: 0
- Total pull request authors: 0
- Average comments per issue: 0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 0
- Pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Issue authors: 0
- Pull request authors: 0
- Average comments per issue: 0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
Pull Request Authors
Top Labels
Issue Labels
Pull Request Labels
Packages
- Total packages: 1
-
Total downloads:
- bioconductor 81,891 total
- Total dependent packages: 2
- Total dependent repositories: 0
- Total versions: 5
- Total maintainers: 1
bioconductor.org: RTCGAToolbox
A new tool for exporting TCGA Firehose data
- Homepage: http://mksamur.github.io/RTCGAToolbox/
- Documentation: https://bioconductor.org/packages/release/bioc/vignettes/RTCGAToolbox/inst/doc/RTCGAToolbox.pdf
- License: GPL-2
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Latest release: 2.38.0
published about 1 year ago
Rankings
Dependent repos count: 0.0%
Dependent packages count: 0.0%
Average: 4.2%
Downloads: 12.5%
Maintainers (1)
Last synced:
10 months ago
Dependencies
DESCRIPTION
cran
- R >= 3.5.0 depends
- BiocGenerics * imports
- DelayedArray * imports
- GenomeInfoDb * imports
- GenomicRanges * imports
- RCircos * imports
- RCurl * imports
- RJSONIO * imports
- RaggedExperiment * imports
- S4Vectors >= 0.23.10 imports
- SummarizedExperiment * imports
- TCGAutils >= 1.9.4 imports
- XML * imports
- data.table * imports
- httr * imports
- limma * imports
- methods * imports
- rvest * imports
- stats * imports
- stringr * imports
- survival * imports
- BiocStyle * suggests
- Homo.sapiens * suggests
- knitr * suggests
- readr * suggests
- rmarkdown * suggests