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PeacoQC

Peak-based selection of high quality cytometry data

https://github.com/saeyslab/peacoqc

Science Score: 10.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ○
    codemeta.json file
  • ○
    .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ✓
    Committers with academic emails
    1 of 11 committers (9.1%) from academic institutions
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (5.6%) to scientific vocabulary

Keywords from Contributors

bioconductor-package gene grna-sequence sequencing genomics ontology immune-repertoire proteomics microbiome molecular-biology
Last synced: 11 months ago · JSON representation

Repository

Peak-based selection of high quality cytometry data

Basic Info
  • Host: GitHub
  • Owner: saeyslab
  • Language: R
  • Default Branch: master
  • Size: 5.61 MB
Statistics
  • Stars: 16
  • Watchers: 3
  • Forks: 9
  • Open Issues: 3
  • Releases: 0
Created over 6 years ago · Last pushed about 1 year ago
Metadata Files
Readme

README.md

PeacoQC

Peak-based selection of high quality cytometry data

Introduction

The PeacoQC package provides quality control functions that will check for monotonic increasing channels and that will remove outliers and unstable events introduced due to e.g. clogs, speed changes etc. during the measurement of your sample. It also provides the functionality of visualising the quality control result of only one sample and the visualisation of the results of multiple samples in one experiment.

Installation

You can install this package using the devtools library.

{r} BiocManager::install("ComplexHeatmap") devtools::install_github("saeyslab/PeacoQC")

Owner

  • Name: DaMBi
  • Login: saeyslab
  • Kind: organization
  • Email: dambi@irc.ugent.be
  • Location: Ghent - Belgium

Data Mining and Modelling for Biomedicine, a VIB - UGent research unit

GitHub Events

Total
  • Issues event: 3
  • Watch event: 2
  • Issue comment event: 3
  • Member event: 2
  • Push event: 1
  • Fork event: 2
Last Year
  • Issues event: 3
  • Watch event: 2
  • Issue comment event: 3
  • Member event: 2
  • Push event: 1
  • Fork event: 2

Committers

Last synced: almost 3 years ago

All Time
  • Total Commits: 139
  • Total Committers: 11
  • Avg Commits per committer: 12.636
  • Development Distribution Score (DDS): 0.187
Past Year
  • Commits: 11
  • Committers: 3
  • Avg Commits per committer: 3.667
  • Development Distribution Score (DDS): 0.364
Top Committers
Name Email Commits
Annelies Emmaneel a****l@h****m 113
Nitesh Turaga n****a@g****m 8
KatrienQ q****n@g****m 4
svgassen s****n@u****e 3
J Wokaty j****y@s****u 2
Jake Wagner j****r@g****m 2
J Wokaty j****y 2
AnneliesEmmaneel 5****l 2
phauchamps p****s@h****m 1
Annelies Emmaneel (Admin) a****n@c****e 1
murphy y****o@b****m 1
Committer Domains (Top 20 + Academic)
beckman.com: 1 cn1365.ugent.be: 1 sph.cuny.edu: 1 ugent.be: 1

Issues and Pull Requests

Last synced: almost 2 years ago

All Time
  • Total issues: 16
  • Total pull requests: 7
  • Average time to close issues: 2 months
  • Average time to close pull requests: 2 months
  • Total issue authors: 9
  • Total pull request authors: 5
  • Average comments per issue: 1.88
  • Average comments per pull request: 0.29
  • Merged pull requests: 5
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 1
  • Pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Issue authors: 1
  • Pull request authors: 0
  • Average comments per issue: 0.0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • denvercal1234GitHub (7)
  • jacobpwagner (2)
  • baj12 (1)
  • Diana-88a (1)
  • EzequielD-86 (1)
  • phauchamps (1)
  • MSHelm (1)
  • SamGG (1)
Pull Request Authors
  • phauchamps (2)
  • jacobpwagner (2)
  • ViktoriaFl (2)
  • ymo-beckman (1)
  • AnneliesEmmaneel (1)
Top Labels
Issue Labels
Pull Request Labels

Packages

  • Total packages: 1
  • Total downloads:
    • bioconductor 14,863 total
  • Total dependent packages: 1
  • Total dependent repositories: 0
  • Total versions: 5
  • Total maintainers: 1
bioconductor.org: PeacoQC

Peak-based selection of high quality cytometry data

  • Versions: 5
  • Dependent Packages: 1
  • Dependent Repositories: 0
  • Downloads: 14,863 Total
Rankings
Dependent repos count: 0.0%
Dependent packages count: 0.0%
Average: 24.4%
Downloads: 73.3%
Maintainers (1)
annelies.emmaneel@hotmail.com
Last synced: 11 months ago

Dependencies

DESCRIPTION cran
  • R >= 4.0 depends
  • ComplexHeatmap * imports
  • circlize * imports
  • flowCore * imports
  • flowWorkspace * imports
  • ggplot2 * imports
  • grDevices * imports
  • grid * imports
  • gridExtra * imports
  • methods * imports
  • plyr * imports
  • stats * imports
  • utils * imports
  • BiocStyle * suggests
  • knitr * suggests
  • rmarkdown * suggests