geneXtendeR
R/Bioconductor package for optimized functional annotation of ChIP-seq data
Science Score: 33.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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○codemeta.json file
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○.zenodo.json file
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✓DOI references
Found 2 DOI reference(s) in README -
✓Academic publication links
Links to: zenodo.org -
✓Committers with academic emails
1 of 5 committers (20.0%) from academic institutions -
○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (12.0%) to scientific vocabulary
Keywords
Repository
R/Bioconductor package for optimized functional annotation of ChIP-seq data
Basic Info
Statistics
- Stars: 9
- Watchers: 3
- Forks: 1
- Open Issues: 0
- Releases: 0
Topics
Metadata Files
README.md
##### R/Bioconductor package for optimized functional annotation of ChIP-seq data
[](http://bioconductor.org/packages/release/bioc/html/geneXtendeR.html "Bioconductor status")
[](https://zenodo.org/badge/latestdoi/58662909)
To see geneXtendeR in action (and why you may want to use it as part of your next ChIP-seq workflow), see Section 1 of the vignette.
Github installation instructions (for latest updated version)
You can install the current GitHub version using the devtools package:
R
if (!require("devtools")) install.packages("devtools")
devtools::install_github("Bohdan-Khomtchouk/geneXtendeR")
And then load the package:
R
library(geneXtendeR)
Bioconductor landing page (updated biannually -- so possibly out-of-date)
geneXtendeR can be found at: https://bioconductor.org/packages/geneXtendeR/. This URL will redirect to the release landing page of the package and is the URL that should be used (in publications, etc.) to refer to geneXtendeR. You can also refer specifically to the development, release, or specific numbered version of Bioconductor:
https://bioconductor.org/packages/devel/geneXtendeR/
https://bioconductor.org/packages/release/geneXtendeR/
https://bioconductor.org/packages/3.8/geneXtendeR/
Bioconductor installation instructions
```R
try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R") biocLite("geneXtendeR") ```
Citation
Khomtchouk BB, Koehler WC, Van Booven DJ, Wahlestedt C: "Optimized functional annotation of ChIP-seq data." F1000Research. 2019, 8(612): https://doi.org/10.12688/f1000research.18966.1
Owner
- Name: Bohdan Khomtchouk
- Login: Bohdan-Khomtchouk
- Kind: user
- Location: Indianapolis, IN
- Company: Indiana University
- Website: https://luddy.iupui.edu/people/bohdan-khomtchouk/
- Twitter: bohdanome
- Repositories: 5
- Profile: https://github.com/Bohdan-Khomtchouk
Assistant Professor | Indiana University
GitHub Events
Total
Last Year
Committers
Last synced: over 2 years ago
Top Committers
| Name | Commits | |
|---|---|---|
| Bohdan-Khomtchouk | b****n@s****u | 150 |
| Bohdan Khomtchouk | k****d@g****m | 50 |
| William Koehler | w****r@g****m | 24 |
| Bohdan Khomtchouk | b****k@B****l | 1 |
| Bohdan Khomtchouk | b****k@M****l | 1 |
Committer Domains (Top 20 + Academic)
Packages
- Total packages: 1
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Total downloads:
- bioconductor 18,574 total
- Total dependent packages: 0
- Total dependent repositories: 0
- Total versions: 5
- Total maintainers: 1
bioconductor.org: geneXtendeR
Optimized Functional Annotation Of ChIP-seq Data
- Homepage: https://github.com/Bohdan-Khomtchouk/geneXtendeR
- Documentation: https://bioconductor.org/packages/release/bioc/vignettes/geneXtendeR/inst/doc/geneXtendeR.pdf
- License: GPL (>= 3)
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Latest release: 1.34.0
published 9 months ago