Science Score: 36.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
○DOI references
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○Academic publication links
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✓Committers with academic emails
2 of 11 committers (18.2%) from academic institutions -
○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (5.0%) to scientific vocabulary
Keywords
Keywords from Contributors
Repository
Reproducible GSEA Benchmarking
Basic Info
- Host: GitHub
- Owner: waldronlab
- License: other
- Language: R
- Default Branch: devel
- Homepage: https://waldronlab.io/GSEABenchmarkeR/
- Size: 726 KB
Statistics
- Stars: 13
- Watchers: 5
- Forks: 6
- Open Issues: 2
- Releases: 0
Topics
Metadata Files
README.md
GSEABenchmarkeR
The GSEABenchmarkeR package implements an extendable framework for reproducible evaluation of set- and network-based methods for enrichment analysis of gene expression data. This includes support for the efficient execution of these methods on comprehensive real data compendia (microarray and RNA-seq) using parallel computation on standard workstations and institutional computer grids. Methods can then be assessed with respect to runtime, statistical significance, and relevance of the results for the phenotypes investigated.
Installation
``` if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager")
BiocManager::install("GSEABenchmarkeR") ```
Owner
- Name: Waldron Lab at the CUNY SPH
- Login: waldronlab
- Kind: organization
- Email: Levi.Waldron@sph.cuny.edu
- Location: New York, NY, USA
- Website: https://waldronlab.io/
- Twitter: LeviWaldron1
- Repositories: 93
- Profile: https://github.com/waldronlab
Software and educational materials from the Waldron lab for computational biostatistics at the CUNY SPH in New York City
GitHub Events
Total
- Push event: 6
- Pull request event: 3
- Fork event: 1
- Create event: 3
Last Year
- Push event: 6
- Pull request event: 3
- Fork event: 1
- Create event: 3
Committers
Last synced: over 2 years ago
Top Committers
| Name | Commits | |
|---|---|---|
| lgeistlinger | l****r@b****e | 50 |
| Nitesh Turaga | n****a@g****m | 14 |
| lgeistlinger | l****r@g****m | 9 |
| schifferl | s****l | 6 |
| J Wokaty | j****y@s****u | 4 |
| lgeistlinger | l****r@s****u | 4 |
| vobencha | v****n@r****g | 2 |
| vobencha | v****a@g****m | 2 |
| J Wokaty | j****y | 2 |
| Kayla-Morrell | k****l@r****g | 1 |
| Hervé Pagès | h****b@g****m | 1 |
Committer Domains (Top 20 + Academic)
Issues and Pull Requests
Last synced: 11 months ago
All Time
- Total issues: 15
- Total pull requests: 2
- Average time to close issues: about 2 months
- Average time to close pull requests: 1 day
- Total issue authors: 5
- Total pull request authors: 2
- Average comments per issue: 2.8
- Average comments per pull request: 0.0
- Merged pull requests: 1
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 0
- Pull requests: 2
- Average time to close issues: N/A
- Average time to close pull requests: 1 day
- Issue authors: 0
- Pull request authors: 2
- Average comments per issue: 0
- Average comments per pull request: 0.0
- Merged pull requests: 1
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- lgeistlinger (4)
- schifferl (4)
- annikagable (3)
- moldach (3)
- SickleLeeks (1)
Pull Request Authors
- LiNk-NY (2)
- bd4everyone (2)
Top Labels
Issue Labels
Pull Request Labels
Packages
- Total packages: 1
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Total downloads:
- bioconductor 14,545 total
- Total dependent packages: 2
- Total dependent repositories: 0
- Total versions: 6
- Total maintainers: 1
bioconductor.org: GSEABenchmarkeR
Reproducible GSEA Benchmarking
- Homepage: https://github.com/waldronlab/GSEABenchmarkeR
- Documentation: https://bioconductor.org/packages/release/bioc/vignettes/GSEABenchmarkeR/inst/doc/GSEABenchmarkeR.pdf
- License: Artistic-2.0
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Latest release: 1.28.1
published about 1 year ago