GenomicInteractionNodes
Science Score: 23.0%
This score indicates how likely this project is to be science-related based on various indicators:
-
○CITATION.cff file
-
✓codemeta.json file
Found codemeta.json file -
○.zenodo.json file
-
○DOI references
-
○Academic publication links
-
✓Committers with academic emails
1 of 4 committers (25.0%) from academic institutions -
○Institutional organization owner
-
○JOSS paper metadata
-
○Scientific vocabulary similarity
Low similarity (3.6%) to scientific vocabulary
Keywords from Contributors
Repository
Basic Info
- Host: GitHub
- Owner: jianhong
- License: apache-2.0
- Language: R
- Default Branch: devel
- Size: 62.5 KB
Statistics
- Stars: 0
- Watchers: 1
- Forks: 0
- Open Issues: 0
- Releases: 0
Metadata Files
README.md
GenomicInteractionNodes
The GenomicInteractionNodes package define genomic interaction hot regions
as interaction nodes with following attributes:
it must contain multiple interaction loops,
it regulates one or more target genes.
Installation
You can install the package via devtools::install_github from github.
{r}
library(devtools)
install_github("jianhong/GenomicInteractionNodes")
You can also try to install it via BiocManager::install when it is ready in Bioconductor.
{r}
library(BiocManager)
install("GenomicInteractionNodes")
Documentation
To view documentation of GenomicInteractionNodes, start R and enter:
{r}
browseVignettes("GenomicInteractionNodes")
Owner
- Name: JIANHONG OU
- Login: jianhong
- Kind: user
- Repositories: 16
- Profile: https://github.com/jianhong
GitHub Events
Total
- Push event: 5
- Create event: 1
Last Year
- Push event: 5
- Create event: 1
Committers
Last synced: over 2 years ago
Top Committers
| Name | Commits | |
|---|---|---|
| JIANHONG OU | j****g | 12 |
| J Wokaty | j****y@s****u | 2 |
| J Wokaty | j****y | 2 |
| Nitesh Turaga | n****a@g****m | 2 |
Committer Domains (Top 20 + Academic)
Issues and Pull Requests
Last synced: 11 months ago
All Time
- Total issues: 0
- Total pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Total issue authors: 0
- Total pull request authors: 0
- Average comments per issue: 0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 0
- Pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Issue authors: 0
- Pull request authors: 0
- Average comments per issue: 0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
Pull Request Authors
Top Labels
Issue Labels
Pull Request Labels
Packages
- Total packages: 1
-
Total downloads:
- bioconductor 5,740 total
- Total dependent packages: 0
- Total dependent repositories: 0
- Total versions: 5
- Total maintainers: 1
bioconductor.org: GenomicInteractionNodes
A R/Bioconductor package to detect the interaction nodes from HiC/HiChIP/HiCAR data
- Homepage: https://github.com/jianhong/GenomicInteractionNodes
- Documentation: https://bioconductor.org/packages/release/bioc/vignettes/GenomicInteractionNodes/inst/doc/GenomicInteractionNodes.pdf
- License: file LICENSE
-
Latest release: 1.12.0
published about 1 year ago
Rankings
Maintainers (1)
Dependencies
- R >= 4.2.0 depends
- stats * depends
- AnnotationDbi * imports
- GO.db * imports
- GenomeInfoDb * imports
- GenomicFeatures * imports
- GenomicRanges * imports
- IRanges * imports
- RBGL * imports
- S4Vectors * imports
- graph * imports
- methods * imports
- BiocStyle * suggests
- RUnit * suggests
- TxDb.Hsapiens.UCSC.hg19.knownGene * suggests
- knitr * suggests
- org.Hs.eg.db * suggests
- rmarkdown * suggests
- rtracklayer * suggests
- testthat * suggests