mzR
This is the git repository matching the Bioconductor package mzR: parser for netCDF, mzXML, mzData and mzML files (mass spectrometry data)
Science Score: 36.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
○DOI references
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○Academic publication links
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✓Committers with academic emails
10 of 43 committers (23.3%) from academic institutions -
○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (8.9%) to scientific vocabulary
Keywords from Contributors
Repository
This is the git repository matching the Bioconductor package mzR: parser for netCDF, mzXML, mzData and mzML files (mass spectrometry data)
Basic Info
- Host: GitHub
- Owner: sneumann
- Language: C++
- Default Branch: devel
- Size: 104 MB
Statistics
- Stars: 45
- Watchers: 9
- Forks: 30
- Open Issues: 68
- Releases: 0
Metadata Files
README.md
Continuous integration
The mzR project master branch is subjected to CI using travis:
The devel branch is tested on multiple architectures by the BioC build farm:
http://bioconductor.org/checkResults/devel/bioc-LATEST/mzR/
Installation
Installation on macOS
If you install from source, you first need to install
the netCDF headers and libraries: brew install netcdf,
and then instal mzR the BioC way via:
if (!requireNamespace("BiocManager", quietly=TRUE))
install.packages("BiocManager")
BiocManager::install("mzR", suppressUpdates = TRUE)
Installation on Linux
We are not shipping the full set of boost headers due to size restrictions. This might cause compilation failure due to missing files. We have tested several OS and compiler build environments successfully, please report any compilation failures at https://github.com/sneumann/mzR/issues and we'll add the missing files.
mzR-2.9.1 with boost-1.59.0 has been tested on the following compilers:
On the BioC build farm (http://bioconductor.org/checkResults/devel/bioc-LATEST/mzR/) * malbec2 (Ubuntu 16.04.1, gcc-5.4.0) * tokay2 (Windows Server 2012 R2, MinGW-W64-4.9.3) * Failling oaxaca (Apple clang 3.5svn / 600.0.57)
Also on: * Debian stretch/sid (gcc-5.4.0) * Ubuntu 16.04 (clang 3.8.0) * Ubuntu 16.04 (gcc-5.4.0) * Ubuntu 14.04 (gcc-4.8.2) * Ubuntu 12.04 (gcc-4.6.3)
Contributions
Please read the contributions guide and code of conduct.
Owner
- Name: Steffen Neumann
- Login: sneumann
- Kind: user
- Repositories: 29
- Profile: https://github.com/sneumann
GitHub Events
Total
- Issues event: 5
- Watch event: 3
- Issue comment event: 31
- Push event: 7
- Pull request review comment event: 7
- Pull request review event: 8
- Pull request event: 14
- Fork event: 4
Last Year
- Issues event: 5
- Watch event: 3
- Issue comment event: 31
- Push event: 7
- Pull request review comment event: 7
- Pull request review event: 8
- Pull request event: 14
- Fork event: 4
Committers
Last synced: about 1 year ago
Top Committers
| Name | Commits | |
|---|---|---|
| Steffen Neumann | s****n@i****e | 256 |
| Laurent | l****0@c****k | 157 |
| thirdwing | k****9@g****m | 134 |
| s.neumann | s****n@b****8 | 100 |
| Laurent Gatto | l****o@d****e | 85 |
| qkou | q****u@u****u | 79 |
| jotsetung | j****r@g****m | 78 |
| l.gatto | l****o@b****8 | 70 |
| Laurent | l****o@g****m | 44 |
| d.tenenbaum | d****m@b****8 | 36 |
| Dan Tenenbaum | d****a@f****g | 36 |
| Sebastian Gibb | m****l@s****e | 19 |
| Nitesh Turaga | n****a@g****m | 14 |
| Bioconductor Git-SVN Bridge | b****c@b****g | 12 |
| kouqiang | k****g@k****) | 11 |
| J Wokaty | j****y@s****u | 10 |
| Hervé Pagès | h****s@f****g | 7 |
| uly55e5 | u****5@w****e | 4 |
| Nils Hoffmann | 3****n | 4 |
| Bryson Gibbons | b****s@p****v | 4 |
| Herve Pages | h****s@f****g | 4 |
| hpages@fhcrc.org | h****s@f****g@b****8 | 4 |
| b.fischer | b****r@b****8 | 3 |
| Bernd Fischer | b****r@e****e | 3 |
| vobencha | v****n@r****g | 2 |
| Michael Nestor | m****r@p****v | 2 |
| sascha.manier@uni-saarland.de | s****r@u****e | 2 |
| vobencha | v****a@g****m | 2 |
| Christian Iseli | c****i@e****h | 1 |
| s.arora | s****a@b****8 | 1 |
| and 13 more... | ||
Committer Domains (Top 20 + Academic)
Issues and Pull Requests
Last synced: 10 months ago
All Time
- Total issues: 82
- Total pull requests: 46
- Average time to close issues: 3 months
- Average time to close pull requests: 4 months
- Total issue authors: 55
- Total pull request authors: 14
- Average comments per issue: 4.74
- Average comments per pull request: 2.91
- Merged pull requests: 39
- Bot issues: 0
- Bot pull requests: 1
Past Year
- Issues: 4
- Pull requests: 19
- Average time to close issues: 15 days
- Average time to close pull requests: 6 days
- Issue authors: 4
- Pull request authors: 8
- Average comments per issue: 0.75
- Average comments per pull request: 1.95
- Merged pull requests: 16
- Bot issues: 0
- Bot pull requests: 1
Top Authors
Issue Authors
- sneumann (15)
- shubham1637 (6)
- jorainer (3)
- lgatto (2)
- rromoli (2)
- hpages (2)
- ghost (2)
- joerg-b (2)
- htmonkey (2)
- NotEvenWron9 (1)
- wangshisheng (1)
- OmarLaham (1)
- thommohr (1)
- allyite (1)
- michaelwitting (1)
Pull Request Authors
- jorainer (17)
- sneumann (10)
- lgatto (4)
- rdhale92 (2)
- nilshoffmann (2)
- saskema (2)
- HinTak (2)
- vjcitn (1)
- Adafede (1)
- grimbough (1)
- mdnestor (1)
- c4chris (1)
- uly55e5 (1)
- dependabot[bot] (1)
Top Labels
Issue Labels
Pull Request Labels
Packages
- Total packages: 1
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Total downloads:
- bioconductor 1,043,698 total
- Total dependent packages: 23
- Total dependent repositories: 0
- Total versions: 5
- Total maintainers: 1
bioconductor.org: mzR
parser for netCDF, mzXML and mzML and mzIdentML files (mass spectrometry data)
- Homepage: https://github.com/sneumann/mzR/
- Documentation: https://bioconductor.org/packages/release/bioc/vignettes/mzR/inst/doc/mzR.pdf
- License: Artistic-2.0
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Latest release: 2.42.0
published about 1 year ago