Science Score: 39.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
✓DOI references
Found 3 DOI reference(s) in README -
○Academic publication links
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○Academic email domains
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○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (12.7%) to scientific vocabulary
Repository
Flow cytometry pipeline GUI
Basic Info
- Host: GitHub
- Owner: UCLouvain-CBIO
- License: other
- Language: R
- Default Branch: main
- Homepage: https://uclouvain-cbio.github.io/CytoPipelineGUI
- Size: 15.9 MB
Statistics
- Stars: 2
- Watchers: 1
- Forks: 0
- Open Issues: 0
- Releases: 0
Metadata Files
README.md
Automation and visualization of flow cytometry data analysis pipelines
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What is CytoPipelineGUI?
CytoPipelineGUI is the companion package of CytoPipeline, and is used for
interactive visualization. It implements two shiny applications :
- a shiny app for interactive comparison of flow frames that are the results
of CytoProcessingSteps of the same or different CytoPipeline experiments.
It is launched using the following statement: CytoPipelineCheckApp()
- a shiny app for interactive visualization and manual adjustments of scale
transformation objects. It is launched using the following statement:
ScaleTransformApp()
License
The CytoPipelineGUI code is provided under GPL license version 3.0 or
higher. The documentation,
including the manual pages and the vignettes, are distributed under a CC BY-SA
4.0 license.
Citation
If you use CytopipelineGUI in your research,
please use the following citation:
Hauchamps P, Bayat B, Delandre S, Hamrouni M, Toussaint M, Temmerman S, Lin D, Gatto L (2024). “CytoPipeline and CytoPipelineGUI: a Bioconductor R package suite for building and visualizing automated pre-processing pipelines for flow cytometry data.” BMC Bioinformatics, 25(1), 80. doi:10.1186/s12859-024-05691-z https://doi.org/10.1186/s12859-024-05691-z.
or run citation("CytoPipelineGUI") to get the bibtex entry.
Owner
- Name: Computational Biology and Bioinformatics at UCLouvain
- Login: UCLouvain-CBIO
- Kind: organization
- Location: Brussels, Belgium
- Website: https://lgatto.github.io/cbio-lab/
- Repositories: 9
- Profile: https://github.com/UCLouvain-CBIO
GitHub Events
Total
- Watch event: 1
- Push event: 7
Last Year
- Watch event: 1
- Push event: 7
Issues and Pull Requests
Last synced: 10 months ago
All Time
- Total issues: 1
- Total pull requests: 0
- Average time to close issues: 3 days
- Average time to close pull requests: N/A
- Total issue authors: 1
- Total pull request authors: 0
- Average comments per issue: 1.0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 0
- Pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Issue authors: 0
- Pull request authors: 0
- Average comments per issue: 0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- phauchamps (1)
Pull Request Authors
Top Labels
Issue Labels
Pull Request Labels
Packages
- Total packages: 1
-
Total downloads:
- bioconductor 4,144 total
- Total dependent packages: 0
- Total dependent repositories: 0
- Total versions: 4
- Total maintainers: 1
bioconductor.org: CytoPipelineGUI
GUI's for visualization of flow cytometry data analysis pipelines
- Homepage: https://uclouvain-cbio.github.io/CytoPipelineGUI
- Documentation: https://bioconductor.org/packages/release/bioc/vignettes/CytoPipelineGUI/inst/doc/CytoPipelineGUI.pdf
- License: GPL-3
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Latest release: 1.6.0
published about 1 year ago