Science Score: 23.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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✓codemeta.json file
Found codemeta.json file -
○.zenodo.json file
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○DOI references
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○Academic publication links
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✓Committers with academic emails
9 of 34 committers (26.5%) from academic institutions -
○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (1.8%) to scientific vocabulary
Keywords from Contributors
bioconductor-package
bioinformatics
pathway-analysis
mirror
cheminformatics
bioconductor
chromatography
gc-fid
reproducibility
open-science
Last synced: 10 months ago
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JSON representation
Repository
bumphunter
Basic Info
- Host: GitHub
- Owner: rafalab
- Language: R
- Default Branch: devel
- Size: 20.9 MB
Statistics
- Stars: 17
- Watchers: 7
- Forks: 14
- Open Issues: 14
- Releases: 0
Created about 12 years ago
· Last pushed over 2 years ago
Metadata Files
Readme
README.md
This is the developer version of the bumphunter R/Bioconductor package.
Owner
- Name: Rafael A Irizarry
- Login: rafalab
- Kind: user
- Location: Boston, MA
- Company: Harvard and Dana-Farber Cancer Institute
- Website: http://rafalab.org
- Twitter: rafalab
- Repositories: 43
- Profile: https://github.com/rafalab
I am a Professor of Applied Statistics at Harvard and the Dana-Farber Cancer Institute. @rafalab
GitHub Events
Total
- Watch event: 4
- Issue comment event: 1
Last Year
- Watch event: 4
- Issue comment event: 1
Committers
Last synced: about 1 year ago
Top Committers
| Name | Commits | |
|---|---|---|
| Harris Jaffee | h****e@j****u | 30 |
| Kasper D. Hansen | k****n@s****u | 30 |
| h.jaffee | h****e@b****8 | 30 |
| khansen | k****n@b****8 | 30 |
| Martin Aryee | a****e@j****u | 18 |
| m.aryee | m****e@b****8 | 17 |
| ririzarr | r****y@g****m | 17 |
| Dan Tenenbaum | d****a@f****g | 17 |
| Nitesh Turaga | n****a@g****m | 14 |
| d.tenenbaum | d****m@b****8 | 14 |
| Bioconductor Git-SVN Bridge | b****c@b****g | 13 |
| Rafael Irizarry | r****r@j****u | 13 |
| ririzarr | r****r@b****8 | 13 |
| Herve Pages | h****s@f****g | 11 |
| Samuela Pollack | s****k@j****u | 11 |
| dfcidatascience | s****i@d****u | 9 |
| hpages@fhcrc.org | h****s@f****g@b****8 | 6 |
| lcolladotor | l****o@j****u | 6 |
| Martin Aryee | m****e@g****m | 6 |
| J Wokaty | j****y@s****u | 6 |
| User-Zero | U****o@u****u | 5 |
| Hervé Pagès | h****s@f****g | 4 |
| DFCI - Department of Data Science | 6****e | 4 |
| Marc Carlson | m****n@f****g | 3 |
| Kasper Daniel Hansen | k****n@g****m | 2 |
| Samuela Pollack | p****k@c****m | 2 |
| m.carlson | m****n@b****8 | 2 |
| vobencha | v****n@r****g | 2 |
| vobencha | v****a@g****m | 2 |
| Ubuntu | u****u@i****l | 1 |
| and 4 more... | ||
Committer Domains (Top 20 + Academic)
fhcrc.org: 5
jhsph.edu: 2
ip-172-31-47-216.ec2.internal: 1
roswellpark.org: 1
cybermesa.com: 1
fredhutch.org: 1
user-zeros-air.dfci.harvard.edu: 1
sph.cuny.edu: 1
ds.dfci.harvard.edu: 1
jimmy.harvard.edu: 1
bioconductor.org: 1
jhu.edu: 1
stat.berkeley.edu: 1
jhmi.edu: 1
Issues and Pull Requests
Last synced: 11 months ago
All Time
- Total issues: 20
- Total pull requests: 12
- Average time to close issues: 4 months
- Average time to close pull requests: about 1 month
- Total issue authors: 12
- Total pull request authors: 5
- Average comments per issue: 1.8
- Average comments per pull request: 1.25
- Merged pull requests: 8
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 0
- Pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Issue authors: 0
- Pull request authors: 0
- Average comments per issue: 0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- lcolladotor (9)
- rrydbirk (1)
- JonBarenboim (1)
- sampoll (1)
- mehrankr (1)
- JEBUNNAHAR (1)
- dsimps1993 (1)
- radivot (1)
- sonali8434 (1)
- ShanEllis (1)
- mtellezp (1)
- kperzel (1)
Pull Request Authors
- lcolladotor (5)
- sampoll (3)
- selviguharaj (2)
- kdkorthauer (1)
- andrewejaffe (1)
Top Labels
Issue Labels
Pull Request Labels
Packages
- Total packages: 1
-
Total downloads:
- bioconductor 463,895 total
- Total dependent packages: 15
- Total dependent repositories: 0
- Total versions: 5
- Total maintainers: 1
bioconductor.org: bumphunter
Bump Hunter
- Homepage: https://github.com/rafalab/bumphunter
- Documentation: https://bioconductor.org/packages/release/bioc/vignettes/bumphunter/inst/doc/bumphunter.pdf
- License: Artistic-2.0
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Latest release: 1.50.0
published about 1 year ago
Rankings
Dependent repos count: 0.0%
Dependent packages count: 3.6%
Forks count: 4.3%
Downloads: 4.7%
Average: 4.7%
Stargazers count: 11.0%
Maintainers (1)
Last synced:
11 months ago
Dependencies
DESCRIPTION
cran
- GenomeInfoDb * depends
- GenomicRanges * depends
- IRanges >= 2.3.23 depends
- R >= 3.5 depends
- S4Vectors >= 0.9.25 depends
- foreach * depends
- iterators * depends
- locfit * depends
- methods * depends
- parallel * depends
- AnnotationDbi * imports
- BiocGenerics * imports
- GenomicFeatures * imports
- doRNG * imports
- limma * imports
- matrixStats * imports
- stats * imports
- utils * imports
- RUnit * suggests
- TxDb.Hsapiens.UCSC.hg19.knownGene * suggests
- doParallel * suggests
- org.Hs.eg.db * suggests
- testthat * suggests