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Open Source Science

EBImage

:art: Image processing toolbox for R

https://github.com/aoles/ebimage

Science Score: 23.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ○
    .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ✓
    Committers with academic emails
    4 of 19 committers (21.1%) from academic institutions
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (5.6%) to scientific vocabulary

Keywords

bioinformatics image-analysis image-processing r

Keywords from Contributors

hdf5 rhdf5 bioconductor-package bioconductor pathway-analysis mirror metabolomics functional-similarity gene gene-sets
Last synced: 6 months ago · JSON representation

Repository

:art: Image processing toolbox for R

Basic Info
  • Host: GitHub
  • Owner: aoles
  • Language: R
  • Default Branch: devel
  • Homepage:
  • Size: 7.02 MB
Statistics
  • Stars: 75
  • Watchers: 12
  • Forks: 28
  • Open Issues: 35
  • Releases: 0
Topics
bioinformatics image-analysis image-processing r
Created over 11 years ago · Last pushed over 1 year ago
Metadata Files
Readme Changelog

README.md

Installation

The package is distributed as part of the Bioconductor project. To install this package, start R and enter:

install.packages("BiocManager") BiocManager::install("EBImage")

Documentation

For an overview of the package functionality, see the package vignette.

Once you install the package, you can access individual man pages by a call to, e.g., ?Image.

FAQ

See my answers on Stack Overflow.

Bug reports and feature requests

Bug reports, feature requests, or any other issues with the package should be reported at https://github.com/aoles/EBImage/issues.

Owner

  • Name: Andrzej K. Oleś
  • Login: aoles
  • Kind: user
  • Location: Heidelberg, Germany
  • Company: @GIScience, @Bioconductor

Research Software Developer

GitHub Events

Total
  • Issues event: 2
  • Watch event: 5
Last Year
  • Issues event: 2
  • Watch event: 5

Committers

Last synced: 9 months ago

All Time
  • Total Commits: 736
  • Total Committers: 19
  • Avg Commits per committer: 38.737
  • Development Distribution Score (DDS): 0.668
Past Year
  • Commits: 1
  • Committers: 1
  • Avg Commits per committer: 1.0
  • Development Distribution Score (DDS): 0.0
Top Committers
Name Email Commits
Oleg Sklyar o****r@e****k 244
Andrzej Oleś a****s@g****m 236
Gregoire Pau g****u@g****m 106
Wolfgang Huber w****r@d****e 50
Dan Tenenbaum d****a@f****g 28
Herve Pages h****s@f****g 17
Nitesh Turaga n****a@g****m 14
Patrick Aboyoun u****n 11
Joseph Barry j****y@e****e 9
J Wokaty j****y@s****u 8
Hervé Pagès h****s@f****g 2
vobencha v****a@g****m 2
Seth Falcon s****n@f****g 2
vobencha v****n@r****g 2
Mike Smith g****h@g****m 1
Martin Morgan m****n@f****g 1
Nishant Gopalakrishnan n****k@f****g 1
LiNk-NY m****z@r****g 1
James MacDonald j****n@m****u 1
Committer Domains (Top 20 + Academic)
fhcrc.org: 5 roswellpark.org: 2 med.umich.edu: 1 fredhutch.org: 1 sph.cuny.edu: 1 embl.de: 1 dkfz-heidelberg.de: 1 ebi.ac.uk: 1

Issues and Pull Requests

Last synced: 6 months ago

All Time
  • Total issues: 60
  • Total pull requests: 12
  • Average time to close issues: 2 months
  • Average time to close pull requests: 4 months
  • Total issue authors: 46
  • Total pull request authors: 9
  • Average comments per issue: 1.83
  • Average comments per pull request: 1.58
  • Merged pull requests: 4
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 2
  • Pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Issue authors: 1
  • Pull request authors: 0
  • Average comments per issue: 0.0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • aoles (9)
  • rafaleo (3)
  • AB-Kent (2)
  • DarioS (2)
  • jkh1 (2)
  • englianhu (2)
  • dingxm (1)
  • mkeays (1)
  • tshicelg (1)
  • ghost (1)
  • yeyuan98 (1)
  • mattwarkentin (1)
  • aditi3112 (1)
  • nickcee (1)
  • balwierz (1)
Pull Request Authors
  • ghaarsma (3)
  • LiNk-NY (2)
  • rtobar (1)
  • EricEdwardBryant (1)
  • jan-glx (1)
  • pmarais (1)
  • federicomarini (1)
  • aucuparia (1)
  • jkh1 (1)
Top Labels
Issue Labels
enhancement (8) bug (5) feature request (5) question (4) help wanted (1) invalid (1) investigate (1)
Pull Request Labels

Packages

  • Total packages: 1
  • Total downloads:
    • bioconductor 574,596 total
  • Total dependent packages: 18
  • Total dependent repositories: 0
  • Total versions: 5
  • Total maintainers: 1
bioconductor.org: EBImage

Image processing and analysis toolbox for R

  • Versions: 5
  • Dependent Packages: 18
  • Dependent Repositories: 0
  • Downloads: 574,596 Total
Rankings
Dependent repos count: 0.0%
Forks count: 1.8%
Average: 2.4%
Stargazers count: 2.9%
Dependent packages count: 3.4%
Downloads: 4.0%
Maintainers (1)
andrzej.oles@gmail.com
Last synced: 6 months ago

Dependencies

DESCRIPTION cran
  • methods * depends
  • BiocGenerics >= 0.7.1 imports
  • RCurl * imports
  • abind * imports
  • fftwtools >= 0.9 imports
  • grDevices * imports
  • graphics * imports
  • htmltools * imports
  • htmlwidgets * imports
  • jpeg * imports
  • locfit * imports
  • png * imports
  • stats * imports
  • tiff * imports
  • utils * imports
  • BiocStyle * suggests
  • digest * suggests
  • knitr * suggests
  • rmarkdown * suggests
  • shiny * suggests