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aroma.light

🔬 R package: This is the Bioconductor devel version of the aroma.light package.

https://github.com/henrikbengtsson/aroma.light

Science Score: 10.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ○
    codemeta.json file
  • ○
    .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ✓
    Committers with academic emails
    2 of 17 committers (11.8%) from academic institutions
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (10.8%) to scientific vocabulary

Keywords

bioconductor package r

Keywords from Contributors

bioconductor-packages bioinformatics pathway-analysis mirror functional-similarity gene gene-sets similarity similarity-measurement reproducibility
Last synced: 6 months ago · JSON representation

Repository

🔬 R package: This is the Bioconductor devel version of the aroma.light package.

Basic Info
Statistics
  • Stars: 1
  • Watchers: 2
  • Forks: 3
  • Open Issues: 0
  • Releases: 0
Topics
bioconductor package r
Created over 11 years ago · Last pushed over 2 years ago
Metadata Files
Readme Contributing

README.md

Bioconductor since badge Bioconductor build status Bioconductor build status R CMD check status Coverage Status

aroma.light: Light-Weight Methods for Normalization and Visualization of Microarray Data using Only Basic R Data Types

Installation

R package aroma.light is available on Bioconductor and can be installed in R as:

r install.packages("BiocManager") BiocManager::install("aroma.light")

Pre-release version

To install the pre-release version that is available in Git branch develop on GitHub, use: r remotes::install_github("HenrikBengtsson/aroma.light", ref="develop") This will install the package from source.

Contributing

To contribute to this package, please see CONTRIBUTING.md.

Owner

  • Name: Henrik Bengtsson
  • Login: HenrikBengtsson
  • Kind: user
  • Company: UCSF

Assoc Professor. R Foundation. R Consortium. Many R packages, e.g. future & matrixStats.

GitHub Events

Total
Last Year

Committers

Last synced: over 1 year ago

All Time
  • Total Commits: 314
  • Total Committers: 17
  • Avg Commits per committer: 18.471
  • Development Distribution Score (DDS): 0.5
Past Year
  • Commits: 3
  • Committers: 1
  • Avg Commits per committer: 3.0
  • Development Distribution Score (DDS): 0.0
Top Committers
Name Email Commits
H Bengtsson hb@a****g 157
Henrik Bengtsson hb@m****e 73
Dan Tenenbaum d****a@f****g 22
Nitesh Turaga n****a@g****m 15
Herve Pages h****s@f****g 12
Henrik Bengtsson h****n@g****m 10
Patrick Aboyoun u****n 10
J Wokaty j****y 2
Hervé Pagès h****s@f****g 2
J Wokaty j****y@s****u 2
vobencha v****n@r****g 2
vobencha v****a@g****m 2
Aaron Lun a****n@w****u 1
Chao-Jen Wong c****2@f****g 1
LiNk-NY m****9@g****m 1
Martin Morgan m****n@f****g 1
Nishant Gopalakrishnan n****k@f****g 1
Committer Domains (Top 20 + Academic)
fhcrc.org: 5 wehi.edu.au: 1 roswellpark.org: 1 sph.cuny.edu: 1 fredhutch.org: 1 maths.lth.se: 1 aroma-project.org: 1

Issues and Pull Requests

Last synced: 6 months ago

All Time
  • Total issues: 19
  • Total pull requests: 1
  • Average time to close issues: about 2 months
  • Average time to close pull requests: 22 days
  • Total issue authors: 3
  • Total pull request authors: 1
  • Average comments per issue: 0.84
  • Average comments per pull request: 8.0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 0
  • Pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Issue authors: 0
  • Pull request authors: 0
  • Average comments per issue: 0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • HenrikBengtsson (17)
  • LTLA (1)
  • rcannood (1)
Pull Request Authors
  • LTLA (1)
Top Labels
Issue Labels
enhancement (6) bug (2) help wanted (1)
Pull Request Labels

Packages

  • Total packages: 1
  • Total downloads:
    • bioconductor 367,223 total
  • Total dependent packages: 3
  • Total dependent repositories: 0
  • Total versions: 5
  • Total maintainers: 1
bioconductor.org: aroma.light

Light-Weight Methods for Normalization and Visualization of Microarray Data using Only Basic R Data Types

  • Versions: 5
  • Dependent Packages: 3
  • Dependent Repositories: 0
  • Downloads: 367,223 Total
Rankings
Dependent repos count: 0.0%
Dependent packages count: 0.0%
Average: 3.8%
Downloads: 11.5%
Maintainers (1)
henrikb@braju.com
Last synced: 6 months ago

Dependencies

DESCRIPTION cran
  • R >= 2.15.2 depends
  • R.methodsS3 >= 1.7.1 imports
  • R.oo >= 1.23.0 imports
  • R.utils >= 2.9.0 imports
  • matrixStats >= 0.55.0 imports
  • stats * imports
  • princurve >= 2.1.4 suggests