Science Score: 23.0%
This score indicates how likely this project is to be science-related based on various indicators:
-
○CITATION.cff file
-
✓codemeta.json file
Found codemeta.json file -
○.zenodo.json file
-
○DOI references
-
○Academic publication links
-
✓Committers with academic emails
2 of 21 committers (9.5%) from academic institutions -
○Institutional organization owner
-
○JOSS paper metadata
-
○Scientific vocabulary similarity
Low similarity (6.3%) to scientific vocabulary
Keywords from Contributors
bioconductor-package
grna-sequence
bioconductor
core-package
hdf5
count
exon
human
illumina
junction
Last synced: 10 months ago
·
JSON representation
Repository
Basic Info
- Host: GitHub
- Owner: genesofeve
- License: gpl-2.0
- Language: HTML
- Default Branch: master
- Size: 26.8 MB
Statistics
- Stars: 62
- Watchers: 12
- Forks: 19
- Open Issues: 18
- Releases: 1
Created almost 10 years ago
· Last pushed over 1 year ago
Metadata Files
Readme
License
README.md
Overview
An R package for creating projection matrices from gene weights extracted from high dimensional genomic analysis.
The most up-to-date version of projectR can be installed directly from the Github Repository:
Installation
```
Method 1 from Bioconductor
Deprecated for now; use Method 2 instead
BiocManager::install("projectR")
Method 2 from Github
BiocManager::install("genesofeve/projectR") ```
Getting Started
We recommend going through the vignette and the Bioinformatics article to learn more about projectR.
Owner
- Name: Genevieve Stein-O'Brien
- Login: genesofeve
- Kind: user
- Location: Baltimore
- Company: Johns Hopkins School of Medicine
- Website: www.steinobrienlab.org
- Twitter: genesofeve
- Repositories: 35
- Profile: https://github.com/genesofeve
GitHub Events
Total
- Issues event: 3
- Delete event: 2
- Push event: 2
- Pull request event: 2
- Pull request review event: 2
- Pull request review comment event: 4
- Create event: 1
Last Year
- Issues event: 3
- Delete event: 2
- Push event: 2
- Pull request event: 2
- Pull request review event: 2
- Pull request review comment event: 4
- Create event: 1
Committers
Last synced: over 2 years ago
Top Committers
| Name | Commits | |
|---|---|---|
| Gaurav | g****2@g****m | 249 |
| genesofeve | g****n@g****m | 114 |
| Genevieve Stein-O'Brien | g****e@v****l | 45 |
| Jared Slosberg | j****1@j****u | 30 |
| Nitesh Turaga | n****a@g****m | 14 |
| Loyale | l****f@g****m | 11 |
| Tom Sherman | t****9@g****m | 10 |
| Genevieve Stein-O'Brien | g****n@G****l | 7 |
| ShumingZhang1997 | 5****7 | 5 |
| Loyal Goff | l****f@n****e | 4 |
| ttriche | t****e@g****m | 4 |
| tlsgusdn1107 | a****2@g****m | 3 |
| Loyal Goff | l****f@L****e | 2 |
| Daniel Van Twisk | d****k@r****g | 2 |
| J Wokaty | j****y@s****u | 2 |
| J Wokaty | j****y | 2 |
| Charles Shin | 3****7 | 2 |
| jaredslosberg | 5****g | 1 |
| Huan Chen | h****n@g****m | 1 |
| Loyal Goff | l****f@n****e | 1 |
| Stephanie Hicks | s****s@g****m | 1 |
Committer Domains (Top 20 + Academic)
new-host-6.home: 1
sph.cuny.edu: 1
roswellpark.org: 1
loyal-imac-2017.home: 1
new-host-7.home: 1
jhmi.edu: 1
Issues and Pull Requests
Last synced: 11 months ago
All Time
- Total issues: 24
- Total pull requests: 21
- Average time to close issues: 7 months
- Average time to close pull requests: 19 days
- Total issue authors: 7
- Total pull request authors: 13
- Average comments per issue: 0.5
- Average comments per pull request: 0.57
- Merged pull requests: 20
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 2
- Pull requests: 2
- Average time to close issues: 1 day
- Average time to close pull requests: 25 days
- Issue authors: 1
- Pull request authors: 1
- Average comments per issue: 0.0
- Average comments per pull request: 0.5
- Merged pull requests: 2
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- Loyale (12)
- dimalvovs (5)
- genesofeve (2)
- jaredslosberg (2)
- parkerstevenson (1)
- corybrunson (1)
- jasonserviss (1)
Pull Request Authors
- dimalvovs (8)
- jaredslosberg (3)
- rpalaganas (2)
- Gaura (2)
- KaiAragaki (2)
- stephaniehicks (1)
- CHuanSite (1)
- sherman5 (1)
- ccahsh (1)
- genesofeve (1)
- dvantwisk (1)
- ttriche (1)
- ShumingZhang1997 (1)
Top Labels
Issue Labels
enhancement (5)
feature (3)
bug (2)
help wanted (1)
priority (1)
good first issue (1)
Pull Request Labels
Packages
- Total packages: 1
-
Total downloads:
- bioconductor 11,747 total
- Total dependent packages: 1
- Total dependent repositories: 0
- Total versions: 5
- Total maintainers: 1
bioconductor.org: projectR
Functions for the projection of weights from PCA, CoGAPS, NMF, correlation, and clustering
- Homepage: https://github.com/genesofeve/projectR/
- Documentation: https://bioconductor.org/packages/release/bioc/vignettes/projectR/inst/doc/projectR.pdf
- License: GPL (==2)
-
Latest release: 1.24.0
published about 1 year ago
Rankings
Dependent repos count: 0.0%
Dependent packages count: 0.0%
Average: 23.1%
Downloads: 69.2%
Maintainers (1)
Last synced:
11 months ago
Dependencies
DESCRIPTION
cran
- R >= 2.10 depends
- Matrix * imports
- MatrixModels * imports
- NMF * imports
- RColorBrewer * imports
- ROCR * imports
- cluster * imports
- cowplot * imports
- dplyr * imports
- ggalluvial * imports
- ggplot2 * imports
- ggrepel * imports
- limma * imports
- methods * imports
- reshape2 * imports
- scales * imports
- stats * imports
- viridis * imports
- BiocStyle * suggests
- CoGAPS * suggests
- ComplexHeatmap * suggests
- devtools * suggests
- gplots * suggests
- grid * suggests
- gridExtra * suggests
- knitr * suggests
- rmarkdown * suggests
- testthat * suggests
.github/workflows/R-CMD-check.yml
actions
- actions/checkout v2 composite
- r-lib/actions/check-r-package v2 composite
- r-lib/actions/setup-pandoc v2 composite
- r-lib/actions/setup-r v2 composite
- r-lib/actions/setup-r-dependencies v2 composite