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cypress

https://github.com/renlyly/cypress

Science Score: 13.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ○
    .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ○
    Academic email domains
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (5.7%) to scientific vocabulary
Last synced: 11 months ago · JSON representation

Repository

Basic Info
  • Host: GitHub
  • Owner: renlyly
  • Language: R
  • Default Branch: devel
  • Size: 4.26 MB
Statistics
  • Stars: 1
  • Watchers: 1
  • Forks: 0
  • Open Issues: 0
  • Releases: 0
Created over 2 years ago · Last pushed about 2 years ago
Metadata Files
Readme

README.md

cypress

CYPRESS is a Cell Type specific power tool. This package aims to perform power analysis for the cell type-specific data. It calculates FDR, FDC,and power, under various study design parameters, including but not limited to sample size, and effect size.

Installation

cypress can be installed from Bioconductor via ``` r if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")

BiocManager::install("cypress")

```

cypress is currently on Bioconductor at https://bioconductor.org/packages/cypress/.

Owner

  • Name: Shilin Yu
  • Login: renlyly
  • Kind: user

GitHub Events

Total
Last Year

Issues and Pull Requests

Last synced: 12 months ago

All Time
  • Total issues: 0
  • Total pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Total issue authors: 0
  • Total pull request authors: 0
  • Average comments per issue: 0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 0
  • Pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Issue authors: 0
  • Pull request authors: 0
  • Average comments per issue: 0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
Pull Request Authors
Top Labels
Issue Labels
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Packages

  • Total packages: 1
  • Total downloads:
    • bioconductor 3,800 total
  • Total dependent packages: 0
  • Total dependent repositories: 0
  • Total versions: 3
  • Total maintainers: 1
bioconductor.org: cypress

Cell-Type-Specific Power Assessment

  • Versions: 3
  • Dependent Packages: 0
  • Dependent Repositories: 0
  • Downloads: 3,800 Total
Rankings
Dependent repos count: 0.0%
Dependent packages count: 31.3%
Average: 42.9%
Downloads: 97.4%
Maintainers (1)
sy597@georgetown.edu
Last synced: 12 months ago

Dependencies

DESCRIPTION cran
  • R >= 4.3.0 depends
  • Biobase * imports
  • BiocParallel * imports
  • MASS * imports
  • PROPER * imports
  • RColorBrewer * imports
  • SummarizedExperiment * imports
  • TCA * imports
  • TOAST * imports
  • abind * imports
  • dplyr * imports
  • e1071 * imports
  • edgeR * imports
  • graphics * imports
  • lubridate * imports
  • methods * imports
  • parallel * imports
  • preprocessCore * imports
  • sirt * imports
  • stats * imports
  • tibble * imports
  • utils * imports
  • BiocGenerics * suggests
  • MatrixGenerics * suggests
  • RUnit * suggests
  • htmltools * suggests
  • knitr * suggests
  • rmarkdown * suggests