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limpca

https://github.com/manonmartin/limpca

Science Score: 13.0%

This score indicates how likely this project is to be science-related based on various indicators:

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    CITATION.cff file
  • ✓
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    Scientific vocabulary similarity
    Low similarity (10.4%) to scientific vocabulary
Last synced: 11 months ago · JSON representation

Repository

Basic Info
Statistics
  • Stars: 2
  • Watchers: 2
  • Forks: 2
  • Open Issues: 16
  • Releases: 0
Created over 3 years ago · Last pushed almost 2 years ago
Metadata Files
Readme Changelog

README.md

limpca

R-CMD-check <!-- badges: end -->

The web page of the package can be accessed here: https://manonmartin.github.io/limpca/

limpca applies a GLM (General Linear Model) version of ASCA and APCA to analyse multivariate sample profiles generated by an experimental design. ASCA/APCA provide powerful visualization tools for multivariate structures in the space of each effect of the statistical model linked to the experimental design and contrarily to MANOVA, it can deal with mutlivariate datasets having more variables than observations. limpca presents different advantages compared to other software in this field: (1) it is able to treat any balanced or unbalanced experimental design for fixed categorical factors, (2) it offers optimized methods to calculate effect importance and test their significance, (3) it allows the user to represent data and ASCA/APCA results with various and rich ggplot2-based graphical outputs that are highly customizable and (4) the package is open to future extensions to more sophisticated statistical models.

Installation

Installation from Bioconductor:

```r if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager")

BiocManager::install("limpca") ```

Additional information

For any enquiry, you can open an issue on Github or send an email to the package authors: bernadette.govaerts@uclouvain.be ; michel.thiel@uclouvain.be or manon.martin@uclouvain.be.

Owner

  • Name: Manon Martin
  • Login: ManonMartin
  • Kind: user

GitHub Events

Total
  • Issues event: 3
  • Watch event: 1
Last Year
  • Issues event: 3
  • Watch event: 1

Issues and Pull Requests

Last synced: 11 months ago

All Time
  • Total issues: 25
  • Total pull requests: 3
  • Average time to close issues: 2 months
  • Average time to close pull requests: about 2 months
  • Total issue authors: 4
  • Total pull request authors: 2
  • Average comments per issue: 0.28
  • Average comments per pull request: 0.0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 2
  • Pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Issue authors: 1
  • Pull request authors: 0
  • Average comments per issue: 0.0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • bgovaerts (12)
  • ManonMartin (7)
  • cvanderaa (1)
  • leonadeak18 (1)
  • AntoineVisschers (1)
Pull Request Authors
  • bgovaerts (2)
  • ManonMartin (1)
Top Labels
Issue Labels
enhancement (4)
Pull Request Labels

Packages

  • Total packages: 1
  • Total downloads:
    • bioconductor 3,546 total
  • Total dependent packages: 0
  • Total dependent repositories: 0
  • Total versions: 3
  • Total maintainers: 1
bioconductor.org: limpca

An R package for the linear modeling of high-dimensional designed data based on ASCA/APCA family of methods

  • Versions: 3
  • Dependent Packages: 0
  • Dependent Repositories: 0
  • Downloads: 3,546 Total
Rankings
Dependent repos count: 0.0%
Average: 15.6%
Dependent packages count: 31.3%
Maintainers (1)
manon.martin@uclouvain.be
Last synced: 11 months ago

Dependencies

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.github/workflows/pkgdown.yaml actions
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  • actions/checkout v3 composite
  • r-lib/actions/setup-pandoc v2 composite
  • r-lib/actions/setup-r v2 composite
  • r-lib/actions/setup-r-dependencies v2 composite
DESCRIPTION cran
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