GEOexplorer
Science Score: 20.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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○codemeta.json file
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○.zenodo.json file
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○DOI references
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✓Academic publication links
Links to: ncbi.nlm.nih.gov -
✓Committers with academic emails
1 of 5 committers (20.0%) from academic institutions -
○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (8.8%) to scientific vocabulary
Keywords from Contributors
Repository
Basic Info
- Host: GitHub
- Owner: guypwhunt
- Language: R
- Default Branch: main
- Size: 256 MB
Statistics
- Stars: 5
- Watchers: 2
- Forks: 3
- Open Issues: 7
- Releases: 0
Metadata Files
README.md
GEOexplorer
GEOexplorer is an R/Bioconductor package and web application that enables users to perform gene expression analysis.
Acknowledgements
The development of GEOexplorer was made possible because of the excellent code provided by GEO2R (https://www.ncbi.nlm.nih.gov/geo/geo2r/).
Web application
GEOexplorer is also available as a website on the following link: https://geoexplorer.rosalind.kcl.ac.uk/
Installation
Use the devtools install_github function for installation e.g.
```R if (!requireNamespace("devtools", quietly = TRUE)) install.packages("devtools")
devtools::install_github("guypwhunt/GEOexplorer") ```
Or install from BioConductor
```R if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager")
BiocManager::install("GEOexplorer") ```
Usage
R
library(GEOexplorer)
loadApp()
Contributing
Pull requests are welcome.
For any changes or issues, please open an issue to discuss what you would like to change.
License
Authors
Guy Hunt with contributions from Fabrizio Smeraldi, Michael Barnes and Rafael Henkin.
Future Updates
Please see our Google doc for the planned feature updates.
Owner
- Login: guypwhunt
- Kind: user
- Repositories: 4
- Profile: https://github.com/guypwhunt
GitHub Events
Total
- Issues event: 1
- Fork event: 1
Last Year
- Issues event: 1
- Fork event: 1
Committers
Last synced: over 2 years ago
Top Committers
| Name | Commits | |
|---|---|---|
| Guy Hunt | g****2@g****m | 242 |
| Nitesh Turaga | n****a@g****m | 4 |
| J Wokaty | j****y@s****u | 2 |
| J Wokaty | j****y | 2 |
| lshep | l****d@r****g | 1 |
Committer Domains (Top 20 + Academic)
Issues and Pull Requests
Last synced: 11 months ago
All Time
- Total issues: 1
- Total pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Total issue authors: 1
- Total pull request authors: 0
- Average comments per issue: 0.0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 1
- Pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Issue authors: 1
- Pull request authors: 0
- Average comments per issue: 0.0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- York-UK (1)
- Huan-Jui-Chang (1)
Pull Request Authors
Top Labels
Issue Labels
Pull Request Labels
Packages
- Total packages: 1
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Total downloads:
- bioconductor 7,434 total
- Total dependent packages: 0
- Total dependent repositories: 0
- Total versions: 5
- Total maintainers: 1
bioconductor.org: GEOexplorer
GEOexplorer: a webserver for gene expression analysis and visualisation
- Homepage: https://github.com/guypwhunt/GEOexplorer/
- Documentation: https://bioconductor.org/packages/release/bioc/vignettes/GEOexplorer/inst/doc/GEOexplorer.pdf
- License: GPL-3
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Latest release: 1.14.0
published about 1 year ago