bioassayR
Cross-target analysis of small molecule bioactivity - This is the official development repository
Science Score: 10.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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○codemeta.json file
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○.zenodo.json file
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○DOI references
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○Academic publication links
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✓Committers with academic emails
3 of 24 committers (12.5%) from academic institutions -
○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (6.9%) to scientific vocabulary
Keywords from Contributors
Repository
Cross-target analysis of small molecule bioactivity - This is the official development repository
Basic Info
- Host: GitHub
- Owner: girke-lab
- Language: R
- Default Branch: devel
- Homepage: http://www.bioconductor.org/packages/bioassayR/
- Size: 1.28 MB
Statistics
- Stars: 6
- Watchers: 4
- Forks: 2
- Open Issues: 0
- Releases: 0
Metadata Files
README.md
bioassayR
Installation
To install the package, please use the BiocManager::install command:
if (!requireNamespace("BiocManager", quietly=TRUE))
install.packages("BiocManager")
BiocManager::install("bioassayR")
To obtain the most recent updates immediately, one can install it directly from
github as follow:
if (!requireNamespace("BiocManager", quietly=TRUE))
install.packages("BiocManager")
BiocManager::install("girke-lab/bioassayR", build_vignettes=TRUE, dependencies=TRUE)
Pre-built Database
A pre-built database of public bioactivity data is available here: http://chemmine.ucr.edu/bioassayr/
And the source code to build the above database with bioassayR is here: https://github.com/TylerBackman/pubchem-bioassay-database
Owner
- Name: Girke Lab
- Login: girke-lab
- Kind: organization
- Email: thomas.girke@ucr.edu
- Location: UC Riverside
- Website: http://girke.bioinformatics.ucr.edu/
- Repositories: 25
- Profile: https://github.com/girke-lab
Research and Teaching Repos
GitHub Events
Total
- Watch event: 1
- Delete event: 1
- Push event: 4
- Create event: 1
Last Year
- Watch event: 1
- Delete event: 1
- Push event: 4
- Create event: 1
Committers
Last synced: almost 3 years ago
Top Committers
| Name | Commits | |
|---|---|---|
| t.backman | t****n@b****8 | 119 |
| Tyler Backman | t****n@u****u | 117 |
| d.tenenbaum | d****m@b****8 | 24 |
| Dan Tenenbaum | d****a@f****g | 16 |
| Nitesh Turaga | n****a@g****m | 14 |
| dcassol | d****l@g****m | 10 |
| Tyler Backman | t****n@u****u | 9 |
| Tyler Backman | T****n | 5 |
| Herve Pages | h****s@f****g | 5 |
| hpages@fhcrc.org | h****s@f****g@b****8 | 3 |
| Hervé Pagès | h****s@f****g | 2 |
| Tyler Backman | t****n@l****v | 2 |
| vobencha | v****n@r****g | 2 |
| vobencha | v****a@g****m | 2 |
| Martin Morgan | m****n@r****g | 1 |
| LiNk-NY | m****z@r****g | 1 |
| mtmorgan@fhcrc.org | m****n@f****g@b****8 | 1 |
| Kayla-Morrell | k****l@r****g | 1 |
| s.arora | s****a@b****8 | 1 |
| Sonali Arora | s****a@f****g | 1 |
| LiNk-NY | m****9@g****m | 1 |
| m.carlson | m****n@b****8 | 1 |
| Marc Carlson | m****n@f****g | 1 |
| Martin Morgan | m****n@f****g | 1 |
Committer Domains (Top 20 + Academic)
Issues and Pull Requests
Last synced: 12 months ago
All Time
- Total issues: 2
- Total pull requests: 0
- Average time to close issues: 3 months
- Average time to close pull requests: N/A
- Total issue authors: 2
- Total pull request authors: 0
- Average comments per issue: 1.5
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 0
- Pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Issue authors: 0
- Pull request authors: 0
- Average comments per issue: 0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- neococo (1)
- TylerBackman (1)
Pull Request Authors
Top Labels
Issue Labels
Pull Request Labels
Packages
- Total packages: 1
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Total downloads:
- bioconductor 31,028 total
- Total dependent packages: 0
- Total dependent repositories: 0
- Total versions: 5
- Total maintainers: 1
bioconductor.org: bioassayR
Cross-target analysis of small molecule bioactivity
- Homepage: https://github.com/girke-lab/bioassayR
- Documentation: https://bioconductor.org/packages/release/bioc/vignettes/bioassayR/inst/doc/bioassayR.pdf
- License: Artistic-2.0
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Latest release: 1.46.0
published about 1 year ago