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mgsa

Mirror of the mgsa Bioconductor package with full history in the master branch. Content of https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/mgsa in the bioconductor branch.

https://github.com/sba1/mgsa-bioc

Science Score: 10.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ○
    codemeta.json file
  • ○
    .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ✓
    Committers with academic emails
    2 of 15 committers (13.3%) from academic institutions
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (6.3%) to scientific vocabulary

Keywords from Contributors

bioconductor-package genomics gene bioinformatics metabolomics mass-spectrometry bioconductor proteomics feature-detection peak-detection
Last synced: 11 months ago · JSON representation

Repository

Mirror of the mgsa Bioconductor package with full history in the master branch. Content of https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/mgsa in the bioconductor branch.

Basic Info
  • Host: GitHub
  • Owner: sba1
  • Language: R
  • Default Branch: master
  • Homepage:
  • Size: 891 KB
Statistics
  • Stars: 5
  • Watchers: 4
  • Forks: 5
  • Open Issues: 3
  • Releases: 0
Created over 12 years ago · Last pushed about 5 years ago

https://github.com/sba1/mgsa-bioc/blob/master/ 

[![Build Status](https://travis-ci.org/sba1/mgsa-bioc.svg?branch=master)](https://travis-ci.org/sba1/mgsa-bioc)

Model-based Gene Set Analysis (MGSA) is a Bayesian modeling 
approach for gene set enrichment. This Bioconductor/R package
```mgsa``` implements MGSA and tools to use MGSA together with
the Gene Ontology.

Development
-----------

This is the official repository that is used for development of the ```mgsa``` Bioconductor/R package.

It conists of two branches: 
 - The ```master``` branch contains the entire history also prior of the inclusion of ```mgsa``` into Bioconductor.
 - The ```bioconductor``` branch contains the history as it is recorded in the Bioconductor project (https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/mgsa, user is ```readonly```, password is also ```readonly```).

Both branches are kept in sync such that there is no difference
between the two branches and also such that the recent history
is essentially the same. At least at the moment, merging from one
branch to another is not done.

Contributions using pull requests favourably based on the
```master``` branch are welcome.

Owner

  • Name: Sebastian Bauer
  • Login: sba1
  • Kind: user

GitHub Events

Total
Last Year

Committers

Last synced: almost 3 years ago

All Time
  • Total Commits: 301
  • Total Committers: 15
  • Avg Commits per committer: 20.067
  • Development Distribution Score (DDS): 0.372
Past Year
  • Commits: 0
  • Committers: 0
  • Avg Commits per committer: 0.0
  • Development Distribution Score (DDS): 0.0
Top Committers
Name Email Commits
Sebastian Bauer m****l@s****o 189
Julien Gagneur g****r@g****e 48
d.tenenbaum d****m@b****8 18
Alexey Stukalov a****v@c****t 15
Nitesh Turaga n****a@g****m 8
Bioconductor Git-SVN Bridge b****c@b****g 6
hpages h****s@f****g 4
Hervé Pagès h****s@f****g 2
vobencha v****n@r****g 2
c.wong c****g@b****8 2
Gökcen Eraslan g****n@h****e 2
vobencha v****a@g****m 2
p.shannon p****n@b****8 1
Gökçen Eraslan g****n@g****m 1
mtmorgan@fhcrc.org m****n@f****g@b****8 1
Committer Domains (Top 20 + Academic)
fhcrc.org: 2 helmholtz-muenchen.de: 1 roswellpark.org: 1 fredhutch.org: 1 bioconductor.org: 1 cemm.oeaw.ac.at: 1 genzentrum.lmu.de: 1 sebastianbauer.info: 1

Issues and Pull Requests

Last synced: over 1 year ago

All Time
  • Total issues: 5
  • Total pull requests: 6
  • Average time to close issues: 2 months
  • Average time to close pull requests: 9 days
  • Total issue authors: 5
  • Total pull request authors: 3
  • Average comments per issue: 3.0
  • Average comments per pull request: 2.17
  • Merged pull requests: 3
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 0
  • Pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Issue authors: 0
  • Pull request authors: 0
  • Average comments per issue: 0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • zellerivo (1)
  • f-heeger (1)
  • gokceneraslan (1)
  • tomsing1 (1)
  • mhk7 (1)
Pull Request Authors
  • alyst (3)
  • knokknok (2)
  • gokceneraslan (1)
Top Labels
Issue Labels
bug (1)
Pull Request Labels

Packages

  • Total packages: 1
  • Total downloads:
    • bioconductor 34,190 total
  • Total dependent packages: 1
  • Total dependent repositories: 0
  • Total versions: 5
  • Total maintainers: 1
bioconductor.org: mgsa

Model-based gene set analysis

  • Versions: 5
  • Dependent Packages: 1
  • Dependent Repositories: 0
  • Downloads: 34,190 Total
Rankings
Dependent repos count: 0.0%
Dependent packages count: 0.0%
Forks count: 10.0%
Average: 10.0%
Stargazers count: 12.3%
Downloads: 27.8%
Maintainers (1)
mail@sebastianbauer.info
Last synced: 11 months ago

Dependencies

DESCRIPTION cran
  • R >= 2.14.0 depends
  • gplots * depends
  • methods * depends
  • graphics * imports
  • stats * imports
  • utils * imports
  • DBI * suggests
  • GO.db * suggests
  • RSQLite * suggests
  • testthat * suggests