Science Score: 23.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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✓codemeta.json file
Found codemeta.json file -
○.zenodo.json file
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○DOI references
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○Academic publication links
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✓Committers with academic emails
1 of 17 committers (5.9%) from academic institutions -
○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (7.3%) to scientific vocabulary
Keywords
annotation
bioconductor
bioconductor-packages
ensembl
Keywords from Contributors
genomics
proteomics
gene
bioconductor-package
mass-spectrometry
feature-detection
core-package
metabolomics
peak-detection
bioinformatics
Last synced: 6 months ago
·
JSON representation
Repository
This is the ensembldb development repository.
Basic Info
- Host: GitHub
- Owner: jorainer
- Language: R
- Default Branch: devel
- Homepage: https://jorainer.github.io/ensembldb
- Size: 6.07 MB
Statistics
- Stars: 35
- Watchers: 2
- Forks: 10
- Open Issues: 37
- Releases: 0
Topics
annotation
bioconductor
bioconductor-packages
ensembl
Created over 10 years ago
· Last pushed 6 months ago
Metadata Files
Readme
readme.md
ensembldb: build and use Ensembl-based annotation packages
For more information please refer to the packages main vignette as well as the online documentation.
Owner
- Name: Johannes Rainer
- Login: jorainer
- Kind: user
- Location: Bolzano, Italy
- Company: Institute for Biomedicine, Eurac Research
- Twitter: jo_rainer
- Repositories: 107
- Profile: https://github.com/jorainer
More metabolomics now, but still some transcriptomics, miRNAs et al. ... and data analysis in general. Love R coding and Emacs with org-mode (or markdown).
GitHub Events
Total
- Issues event: 4
- Watch event: 2
- Issue comment event: 16
- Push event: 1
Last Year
- Issues event: 4
- Watch event: 2
- Issue comment event: 16
- Push event: 1
Committers
Last synced: 11 months ago
Top Committers
| Name | Commits | |
|---|---|---|
| jotsetung | j****r@g****m | 279 |
| j.rainer | j****r@b****8 | 30 |
| Tim-Yu | b****m@g****m | 25 |
| Nitesh Turaga | n****a@g****m | 14 |
| J Wokaty | j****y | 8 |
| Hervé Pagès | h****s@f****g | 8 |
| d.tenenbaum | d****m@b****8 | 7 |
| hpages@fhcrc.org | h****s@f****g@b****8 | 6 |
| lgatto | l****o@g****m | 5 |
| vobencha | v****a@g****m | 2 |
| Johannes Rainer | jo@m****u | 2 |
| vobencha | v****n@r****g | 2 |
| Martin Morgan | m****n@r****g | 1 |
| Mike Love | m****e | 1 |
| v.obenchain | v****n@b****8 | 1 |
| s.arora | s****a@b****8 | 1 |
| Philip Lijnzaad | p****d@g****m | 1 |
Committer Domains (Top 20 + Academic)
Issues and Pull Requests
Last synced: 6 months ago
All Time
- Total issues: 100
- Total pull requests: 9
- Average time to close issues: about 1 month
- Average time to close pull requests: 2 days
- Total issue authors: 52
- Total pull request authors: 7
- Average comments per issue: 3.59
- Average comments per pull request: 0.78
- Merged pull requests: 9
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 6
- Pull requests: 0
- Average time to close issues: 27 days
- Average time to close pull requests: N/A
- Issue authors: 4
- Pull request authors: 0
- Average comments per issue: 2.0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- jorainer (32)
- guidohooiveld (4)
- zyh4482 (3)
- mjsteinbaugh (3)
- Shicheng-Guo (2)
- ibwoo (2)
- kotliary (2)
- mschubert (2)
- mtmorgan (2)
- ccwang002 (2)
- Tim-Yu (2)
- lgatto (2)
- Ci-TJ (2)
- manogenome (2)
- Pedramto89 (1)
Pull Request Authors
- lgatto (2)
- jorainer (2)
- plijnzaad (1)
- mikelove (1)
- Tim-Yu (1)
- hpages (1)
- mtmorgan (1)
Top Labels
Issue Labels
enhancement (1)
bug (1)
Pull Request Labels
Packages
- Total packages: 1
-
Total downloads:
- bioconductor 1,312,810 total
- Total dependent packages: 40
- Total dependent repositories: 0
- Total versions: 6
- Total maintainers: 1
bioconductor.org: ensembldb
Utilities to create and use Ensembl-based annotation databases
- Homepage: https://github.com/jorainer/ensembldb
- Documentation: https://bioconductor.org/packages/release/bioc/vignettes/ensembldb/inst/doc/ensembldb.pdf
- License: LGPL
-
Latest release: 2.32.0
published 10 months ago
Rankings
Dependent repos count: 0.0%
Dependent packages count: 2.1%
Downloads: 2.3%
Average: 3.3%
Stargazers count: 5.7%
Forks count: 6.3%
Maintainers (1)
Last synced:
6 months ago
Dependencies
DESCRIPTION
cran
- AnnotationFilter >= 1.5.2 depends
- BiocGenerics >= 0.15.10 depends
- GenomicFeatures >= 1.29.10 depends
- GenomicRanges >= 1.31.18 depends
- R >= 3.5.0 depends
- RMariaDB * enhances
- shiny * enhances
- AnnotationDbi >= 1.31.19 imports
- Biobase * imports
- Biostrings >= 2.47.9 imports
- DBI * imports
- GenomeInfoDb * imports
- IRanges >= 2.13.24 imports
- ProtGenerics * imports
- RSQLite >= 1.1 imports
- Rsamtools * imports
- S4Vectors >= 0.23.10 imports
- curl * imports
- methods * imports
- rtracklayer * imports
- AnnotationHub * suggests
- BSgenome.Hsapiens.NCBI.GRCh38 * suggests
- BiocStyle * suggests
- EnsDb.Hsapiens.v86 >= 0.99.8 suggests
- Gviz >= 1.20.0 suggests
- ggbio >= 1.24.0 suggests
- knitr * suggests
- magrittr * suggests
- rmarkdown * suggests
- testthat * suggests
inst/pkg-template/DESCRIPTION
cran
- ensembldb * depends
.github/workflows/check-bioc.yml
actions
- actions/cache v2 composite
- actions/checkout v2 composite
- actions/upload-artifact master composite
- r-lib/actions/setup-pandoc v2 composite
- r-lib/actions/setup-r v2 composite