Science Score: 13.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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✓codemeta.json file
Found codemeta.json file -
○.zenodo.json file
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○DOI references
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○Academic publication links
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○Committers with academic emails
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○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (10.3%) to scientific vocabulary
Keywords
Keywords from Contributors
Repository
Interactive visulizations for track-based genomic data in R
Basic Info
- Host: GitHub
- Owner: Marlin-Na
- Language: R
- Default Branch: master
- Homepage: https://tnt.marlin.pub/articles/introduction
- Size: 10.3 MB
Statistics
- Stars: 15
- Watchers: 2
- Forks: 4
- Open Issues: 5
- Releases: 0
Topics
Metadata Files
README.md
TnT
TnT is a R package that wraps the TnT javascript libraries to provide track-based visulizations from R. It is useful for displaying genomic features as a simple genome browser, particularly when working with relevant Bioconductor packages.
To install the stable version from biocondcutor, use
R
if (!requireNamespace("BiocManager", quietly=TRUE))
install.packages("BiocManager")
BiocManager::install("TnT")
Or alternatively, install the latest version from github with
R
devtools::install_github("Marlin-Na/TnT")
To get started, checkout:
- The package vignette Introduction to TnT
- Examples of different track types.
You can also find the package on Bioconductor.
GSoC 2017
This R package was a Google Summer of Code project in 2017, kindly mentored by Toby Dylan Hocking and Miguel Pignatelli, under the organization of R project for statistical computing.
Please see:
- The project link
- Wiki of the project idea
- My blog post as a summary of the project.
Owner
- Name: Marlin
- Login: Marlin-Na
- Kind: user
- Location: Betelgeuse VII
- Repositories: 6
- Profile: https://github.com/Marlin-Na
希望迟迟不来 等死了苦苦等待的人
GitHub Events
Total
- Watch event: 1
Last Year
- Watch event: 1
Committers
Last synced: about 1 year ago
Top Committers
| Name | Commits | |
|---|---|---|
| Marlin- | m****-@g****n | 379 |
| Nitesh Turaga | n****a@g****m | 14 |
| J Wokaty | j****y | 8 |
| Hervé Pagès | h****s@f****g | 3 |
| vobencha | v****a@g****m | 2 |
| LiNk-NY | m****9@g****m | 2 |
| vobencha | v****n@r****g | 2 |
| lshep | l****d@r****g | 1 |
Committer Domains (Top 20 + Academic)
Issues and Pull Requests
Last synced: about 1 year ago
All Time
- Total issues: 8
- Total pull requests: 1
- Average time to close issues: about 1 month
- Average time to close pull requests: less than a minute
- Total issue authors: 7
- Total pull request authors: 1
- Average comments per issue: 1.0
- Average comments per pull request: 0.0
- Merged pull requests: 1
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 1
- Pull requests: 1
- Average time to close issues: N/A
- Average time to close pull requests: less than a minute
- Issue authors: 1
- Pull request authors: 1
- Average comments per issue: 0.0
- Average comments per pull request: 0.0
- Merged pull requests: 1
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- jrboyd (2)
- tdhock (1)
- ddalfovo (1)
- nyudanin (1)
- Marlin-Na (1)
- vjcitn (1)
- UmaSangumathi (1)
Pull Request Authors
- Marlin-Na (1)
Top Labels
Issue Labels
Pull Request Labels
Packages
- Total packages: 1
-
Total downloads:
- bioconductor 11,687 total
- Total dependent packages: 0
- Total dependent repositories: 0
- Total versions: 6
- Total maintainers: 1
bioconductor.org: TnT
Interactive Visualization for Genomic Features
- Homepage: https://github.com/Marlin-Na/TnT
- Documentation: https://bioconductor.org/packages/release/bioc/vignettes/TnT/inst/doc/TnT.pdf
- License: AGPL-3
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Latest release: 1.30.0
published 10 months ago
Rankings
Maintainers (1)
Dependencies
- GenomicRanges * depends
- R >= 3.4 depends
- Biobase * imports
- GenomeInfoDb * imports
- IRanges * imports
- S4Vectors * imports
- data.table * imports
- grDevices * imports
- htmlwidgets * imports
- jsonlite * imports
- knitr * imports
- methods * imports
- stats * imports
- utils * imports
- BiocManager * suggests
- GenomicFeatures * suggests
- rmarkdown * suggests
- shiny * suggests
- testthat * suggests