rigvf
R Interface to the Impact of Genomic Variation on Function ('IGVF') Data Portal
Science Score: 13.0%
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○CITATION.cff file
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✓codemeta.json file
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○.zenodo.json file
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○DOI references
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○Academic publication links
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (8.9%) to scientific vocabulary
Repository
R Interface to the Impact of Genomic Variation on Function ('IGVF') Data Portal
Basic Info
- Host: GitHub
- Owner: IGVF
- License: mit
- Language: R
- Default Branch: devel
- Homepage: https://igvf.github.io/rigvf/
- Size: 1.71 MB
Statistics
- Stars: 0
- Watchers: 2
- Forks: 0
- Open Issues: 3
- Releases: 0
Metadata Files
README.md
rigvf: IGVF Catalog from R 
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rigvf provides access the Impact of Genomic Variation on Function (IGVF) Catalog from within R/Bioconductor, allowing integration with Bioconductor resources, classes, and methods.
Only limited functionality is currently implemented, mostly centered around associations among genetic variants, genomic elements, and genes.
Installation
Install the development version from GitHub with:
``` r
install.packages("BiocManager") # if not installed
BiocManager::install("IGVF/rigvf") ```
Using rigvf
See the Accessing data from the IGVF Catalog vignette for basic use.
See ?catalog_queries and ?db_queries for example functions for accessing
IGVF data through the Catalog API and ArangoDB API, respectively.
Data license
For IGVF Catalog data license, see the IGVF policy page.
Owner
- Name: Impact of Genomic Variation on Function (IGVF)
- Login: IGVF
- Kind: organization
- Location: United States of America
- Website: https://igvf.org/
- Twitter: IGVFConsortium
- Repositories: 3
- Profile: https://github.com/IGVF
The IGVF Consortium aims to understand how genomic variation affects genome function, which in turn impacts phenotype.
GitHub Events
Total
- Issues event: 3
- Push event: 39
- Create event: 1
Last Year
- Issues event: 3
- Push event: 39
- Create event: 1
Issues and Pull Requests
Last synced: 10 months ago
All Time
- Total issues: 3
- Total pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Total issue authors: 1
- Total pull request authors: 0
- Average comments per issue: 0.0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 3
- Pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Issue authors: 1
- Pull request authors: 0
- Average comments per issue: 0.0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- mikelove (3)
Pull Request Authors
Top Labels
Issue Labels
Pull Request Labels
Packages
- Total packages: 1
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Total downloads:
- bioconductor 1,466 total
- Total dependent packages: 0
- Total dependent repositories: 0
- Total versions: 2
- Total maintainers: 1
bioconductor.org: rigvf
R interface to the IGVF Catalog
- Homepage: https://IGVF.github.io/rigvf
- Documentation: https://bioconductor.org/packages/release/bioc/vignettes/rigvf/inst/doc/rigvf.pdf
- License: MIT + file LICENSE
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Latest release: 1.0.2
published about 1 year ago
Rankings
Maintainers (1)
Dependencies
- cachem * imports
- dplyr * imports
- httr2 * imports
- jsonlite * imports
- memoise * imports
- rjsoncons * imports
- tidyr * imports
- whisker * imports
- JamesIves/github-pages-deploy-action v4.5.0 composite
- actions/checkout v4 composite
- r-lib/actions/setup-pandoc v2 composite
- r-lib/actions/setup-r v2 composite
- r-lib/actions/setup-r-dependencies v2 composite