selectKSigs
:package: Selection of K in finding the number of mutational signatures in somatic mutations
Science Score: 23.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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✓codemeta.json file
Found codemeta.json file -
○.zenodo.json file
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○DOI references
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○Academic links in README
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✓Committers with academic emails
1 of 3 committers (33.3%) from academic institutions -
○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (0.5%) to scientific vocabulary
Keywords from Contributors
mutational-signatures
rjags
somatic-mutations
Last synced: 10 months ago
·
JSON representation
Repository
:package: Selection of K in finding the number of mutational signatures in somatic mutations
Basic Info
- Host: GitHub
- Owner: USCbiostats
- Language: R
- Default Branch: master
- Homepage: http://www.bioconductor.org/packages/release/bioc/html/selectKSigs.html
- Size: 308 KB
Statistics
- Stars: 0
- Watchers: 5
- Forks: 0
- Open Issues: 0
- Releases: 0
Created almost 7 years ago
· Last pushed over 4 years ago
Metadata Files
Changelog
Owner
- Name: USC Division of Biostatistics
- Login: USCbiostats
- Kind: organization
- Location: Los Angeles, CA
- Website: https://biostatsepi.usc.edu/
- Repositories: 34
- Profile: https://github.com/USCbiostats
GitHub Events
Total
Last Year
Committers
Last synced: over 2 years ago
Top Committers
| Name | Commits | |
|---|---|---|
| zhiiiyang | z****g@u****u | 7 |
| Nitesh Turaga | n****a@g****m | 6 |
| zhiiiyang | z****5@g****m | 2 |
Committer Domains (Top 20 + Academic)
usc.edu: 1
Issues and Pull Requests
Last synced: 11 months ago
All Time
- Total issues: 0
- Total pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Total issue authors: 0
- Total pull request authors: 0
- Average comments per issue: 0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 0
- Pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Issue authors: 0
- Pull request authors: 0
- Average comments per issue: 0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
Pull Request Authors
Top Labels
Issue Labels
Pull Request Labels
Packages
- Total packages: 1
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Total downloads:
- bioconductor 8,194 total
- Total dependent packages: 0
- Total dependent repositories: 0
- Total versions: 5
- Total maintainers: 1
bioconductor.org: selectKSigs
Selecting the number of mutational signatures using a perplexity-based measure and cross-validation
- Homepage: https://github.com/USCbiostats/selectKSigs
- Documentation: https://bioconductor.org/packages/release/bioc/vignettes/selectKSigs/inst/doc/selectKSigs.pdf
- License: GPL-3
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Latest release: 1.20.0
published about 1 year ago
Rankings
Dependent repos count: 0.0%
Dependent packages count: 0.0%
Average: 26.6%
Downloads: 79.7%
Maintainers (1)
Last synced:
11 months ago
Dependencies
DESCRIPTION
cran
- R >= 3.6 depends
- HiLDA * imports
- Rcpp * imports
- gtools * imports
- magrittr * imports
- methods * imports
- BiocStyle * suggests
- dplyr * suggests
- ggplot2 * suggests
- knitr * suggests
- rmarkdown * suggests
- testthat * suggests
- tidyr * suggests