DEFormats
:recycle: Differential gene expression data formats converter
Science Score: 10.0%
This score indicates how likely this project is to be science-related based on various indicators:
-
○CITATION.cff file
-
○codemeta.json file
-
○.zenodo.json file
-
○DOI references
-
○Academic publication links
-
✓Committers with academic emails
1 of 11 committers (9.1%) from academic institutions -
○Institutional organization owner
-
○JOSS paper metadata
-
○Scientific vocabulary similarity
Low similarity (5.0%) to scientific vocabulary
Keywords from Contributors
Repository
:recycle: Differential gene expression data formats converter
Statistics
- Stars: 4
- Watchers: 2
- Forks: 0
- Open Issues: 5
- Releases: 0
Metadata Files
README.md
Installation
DEFormats is distributed through the Bioconductor package repository. To install the package, start R and enter:
if (!requireNamespace("BiocManager", quietly=TRUE))
install.packages("BiocManager")
BiocManager::install("DEFormats")
Documentation
For an overview of the package functionality see the vignette.
Once you install the package, you can access individual man pages by a call to, e.g., ?DEFormats.
Bug reports and feature requests
Bug reports, feature requests, or any other issues with the package should be reported at https://github.com/aoles/DEFormats/issues.
Owner
- Name: Andrzej K. Oleś
- Login: aoles
- Kind: user
- Location: Heidelberg, Germany
- Company: @GIScience, @Bioconductor
- Twitter: andrzejkoles
- Repositories: 59
- Profile: https://github.com/aoles
Research Software Developer
GitHub Events
Total
Last Year
Committers
Last synced: over 1 year ago
Top Committers
| Name | Commits | |
|---|---|---|
| Nitesh Turaga | n****a@g****m | 14 |
| aoles | a****s@g****m | 11 |
| Dan Tenenbaum | d****a@f****g | 4 |
| Herve Pages | h****s@f****g | 4 |
| vobencha | v****a@g****m | 2 |
| J Wokaty | j****y@s****u | 2 |
| Hervé Pagès | h****s@f****g | 2 |
| vobencha | v****n@r****g | 2 |
| LiNk-NY | m****9@g****m | 1 |
| Kayla-Morrell | k****l@r****g | 1 |
| Martin Morgan | m****n@f****g | 1 |
Committer Domains (Top 20 + Academic)
Issues and Pull Requests
Last synced: 11 months ago
All Time
- Total issues: 8
- Total pull requests: 0
- Average time to close issues: 4 months
- Average time to close pull requests: N/A
- Total issue authors: 6
- Total pull request authors: 0
- Average comments per issue: 2.5
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 0
- Pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Issue authors: 0
- Pull request authors: 0
- Average comments per issue: 0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- lcolladotor (2)
- federicomarini (2)
- nickschurch (1)
- malcook (1)
- elainamaldonado (1)
- noor-albader (1)
Pull Request Authors
Top Labels
Issue Labels
Pull Request Labels
Packages
- Total packages: 1
-
Total downloads:
- bioconductor 36,626 total
- Total dependent packages: 2
- Total dependent repositories: 0
- Total versions: 5
- Total maintainers: 1
bioconductor.org: DEFormats
Differential gene expression data formats converter
- Homepage: https://github.com/aoles/DEFormats
- Documentation: https://bioconductor.org/packages/release/bioc/vignettes/DEFormats/inst/doc/DEFormats.pdf
- License: GPL-3
-
Latest release: 1.36.0
published over 1 year ago
Rankings
Maintainers (1)
Dependencies
- DESeq2 * imports
- GenomicRanges * imports
- S4Vectors * imports
- SummarizedExperiment * imports
- checkmate * imports
- data.table * imports
- edgeR >= 3.13.4 imports
- methods * imports
- stats * imports
- BiocStyle >= 1.8.0 suggests
- knitr * suggests
- rmarkdown * suggests
- testthat * suggests