Science Score: 36.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
○DOI references
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○Academic publication links
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✓Committers with academic emails
5 of 28 committers (17.9%) from academic institutions -
○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (11.6%) to scientific vocabulary
Keywords
Keywords from Contributors
Repository
Basic Info
- Host: GitHub
- Owner: Bioconductor
- Language: R
- Default Branch: devel
- Homepage: http://bioconductor.org/packages/BiocCheck
- Size: 5 MB
Statistics
- Stars: 9
- Watchers: 14
- Forks: 28
- Open Issues: 6
- Releases: 0
Topics
Metadata Files
README.md
BiocCheck 
<!-- badges: end -->
The BiocCheck package provides a set of tools for checking a package
against the current version of Bioconductor coding and style standards.
Installation
To install this package, start R and enter:
```r if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager")
BiocManager::install("BiocCheck") ```
Bioconductor Guidelines
The Bioconductor guidelines are available at
https://contributions.bioconductor.org/. This site provides the basis for
many of the checks performed by BiocCheck. We encourage packages to
follow these guidelines to ensure that they are of high quality and
interoperate well with other Bioconductor packages.
Usage
To check a package, use the BiocCheck::BiocCheck() function. For
example, to check the BiocCheck package itself, use:
r
BiocCheck::BiocCheck("BiocCheck")
in the directory above the source package directory.
Note that the BiocCheck package must be installed to use this function.
If you are using RStudio, you can use the BiocCheck addin to check a
package. First, install the BiocAddins package:
r
BiocManager::install("Bioconductor/BiocAddins")
Then, in RStudio, click on the "Addins" menu, and select "Run BiocCheck".
Documentation
The BiocCheck package contains a vignette that describes the package
in more detail. To view the vignette, start R and enter:
r
vignette("BiocCheck")
Owner
- Name: Bioconductor
- Login: Bioconductor
- Kind: organization
- Website: https://bioconductor.org
- Repositories: 156
- Profile: https://github.com/Bioconductor
Software for the analysis and comprehension of high-throughput genomic data
GitHub Events
Total
- Issues event: 30
- Delete event: 10
- Member event: 1
- Issue comment event: 55
- Push event: 60
- Pull request review event: 2
- Pull request review comment event: 2
- Fork event: 2
- Create event: 7
Last Year
- Issues event: 30
- Delete event: 10
- Member event: 1
- Issue comment event: 55
- Push event: 60
- Pull request review event: 2
- Pull request review comment event: 2
- Fork event: 2
- Create event: 7
Committers
Last synced: 9 months ago
Top Committers
| Name | Commits | |
|---|---|---|
| LiNk-NY | m****z@r****g | 652 |
| Dan Tenenbaum | d****a@f****g | 181 |
| d.tenenbaum | d****m@b****8 | 177 |
| lshep | l****d@r****g | 103 |
| Martin Morgan | m****n@f****g | 28 |
| mtmorgan@fhcrc.org | m****n@f****g@b****8 | 24 |
| Martin Morgan | m****n@r****g | 18 |
| Nitesh Turaga | n****a@g****m | 16 |
| Federico Marini | m****f@u****e | 11 |
| Mike Smith | g****h@g****m | 11 |
| J Wokaty | j****y@s****u | 10 |
| Daniel Van Twisk | d****k@r****g | 8 |
| Leonardo Collado Torres | l****r@g****m | 6 |
| Michael Lawrence | l****i@i****u | 4 |
| Herve Pages | h****s@f****g | 4 |
| m.lawrence | m****e@b****8 | 4 |
| Lluís | l****a@g****m | 3 |
| Pierrick Roger | p****r@i****m | 3 |
| Sergio Oller | s****r@g****m | 3 |
| vobencha | v****n@r****g | 3 |
| vobencha | v****a@g****m | 2 |
| A Wokaty | a****y@s****u | 2 |
| hpages@fhcrc.org | h****s@f****g@b****8 | 2 |
| Hervé Pagès | h****s@f****g | 2 |
| FreekManders | f****s@g****m | 2 |
| Christian Mertes | m****s@i****e | 2 |
| Jim Hester | j****r@g****m | 1 |
| Shian Su | c****b@g****m | 1 |
Committer Domains (Top 20 + Academic)
Issues and Pull Requests
Last synced: 6 months ago
All Time
- Total issues: 96
- Total pull requests: 25
- Average time to close issues: 11 months
- Average time to close pull requests: 2 months
- Total issue authors: 39
- Total pull request authors: 10
- Average comments per issue: 3.44
- Average comments per pull request: 2.28
- Merged pull requests: 16
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 11
- Pull requests: 0
- Average time to close issues: about 2 months
- Average time to close pull requests: N/A
- Issue authors: 7
- Pull request authors: 0
- Average comments per issue: 2.82
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- lshep (17)
- hpages (13)
- vjcitn (10)
- LiNk-NY (9)
- mtmorgan (4)
- lcolladotor (3)
- llrs (2)
- jorainer (2)
- bschilder (2)
- HenrikBengtsson (2)
- boyiguo1 (2)
- grimbough (2)
- kakopo (1)
- jvelezmagic (1)
- harpomaxx (1)
Pull Request Authors
- LiNk-NY (16)
- zeehio (2)
- vjcitn (2)
- grimbough (2)
- almeidasilvaf (2)
- Shians (1)
- gladkia (1)
- bschilder (1)
- nturaga (1)
- kevinrue (1)
Top Labels
Issue Labels
Pull Request Labels
Packages
- Total packages: 1
-
Total downloads:
- bioconductor 272,436 total
- Total dependent packages: 6
- Total dependent repositories: 0
- Total versions: 8
- Total maintainers: 1
bioconductor.org: BiocCheck
Bioconductor-specific package checks
- Homepage: https://github.com/Bioconductor/BiocCheck
- Documentation: https://bioconductor.org/packages/release/bioc/vignettes/BiocCheck/inst/doc/BiocCheck.pdf
- License: Artistic-2.0
-
Latest release: 1.44.2
published 9 months ago
Rankings
Maintainers (1)
Dependencies
- R >= 4.2.0 depends
- codetoolsBioC * enhances
- BiocManager * imports
- biocViews >= 1.33.7 imports
- codetools * imports
- graph * imports
- httr * imports
- knitr * imports
- methods * imports
- stringdist * imports
- tools * imports
- utils * imports
- Biobase * suggests
- BiocGenerics * suggests
- BiocStyle * suggests
- RUnit * suggests
- devtools >= 1.4.1 suggests
- downloader * suggests
- jsonlite * suggests
- rmarkdown * suggests
- usethis * suggests
- R >= 3.1.0 depends
- jsonlite * depends
- devtools * imports
- tools * imports
- R >= 3.1.0 depends
- jsonlite * depends
- R >= 3.1.0 depends
- jsonlite * depends
- devtools * imports
- tools * imports