Wrench
Compositional correction and normalization for sparse, under-sampled count data
Science Score: 20.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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○codemeta.json file
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○.zenodo.json file
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○DOI references
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✓Academic publication links
Links to: biorxiv.org -
✓Committers with academic emails
4 of 8 committers (50.0%) from academic institutions -
○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (2.3%) to scientific vocabulary
Last synced: 11 months ago
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Repository
Compositional correction and normalization for sparse, under-sampled count data
Statistics
- Stars: 7
- Watchers: 2
- Forks: 2
- Open Issues: 2
- Releases: 0
Created almost 8 years ago
· Last pushed over 7 years ago
https://github.com/HCBravoLab/Wrench/blob/master/
R package source code for Wrench normalization for sparse sequencing count data (e.g., metagenomics).
Paper preprint: https://www.biorxiv.org/content/early/2018/01/31/142851
```
#installation
library(devtools)
devtools::install_github("HCBravoLab/Wrench")
#usage
library(Wrench)
?wrench
```
Owner
- Name: HCBravoLab
- Login: HCBravoLab
- Kind: organization
- Repositories: 22
- Profile: https://github.com/HCBravoLab
GitHub Events
Total
- Watch event: 1
Last Year
- Watch event: 1
Committers
Last synced: over 2 years ago
Top Committers
| Name | Commits | |
|---|---|---|
| Senthil Kumar Muthiah | s****l@S****l | 7 |
| Senthil Kumar Muthiah | s****l@v****u | 7 |
| Jayaram Kancherla | j****a@g****m | 6 |
| Senthil Kumar Muthiah | s****h@u****u | 6 |
| Senthil Kumar Muthiah | s****l@v****u | 3 |
| vobencha | v****a@g****m | 2 |
| Senthil Kumar Muthiah | s****l@v****u | 1 |
| hcorrada | h****a@g****m | 1 |
Committer Domains (Top 20 + Academic)
Packages
- Total packages: 1
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Total downloads:
- bioconductor 113,251 total
- Total dependent packages: 1
- Total dependent repositories: 0
- Total versions: 5
- Total maintainers: 1
bioconductor.org: Wrench
Wrench normalization for sparse count data
- Homepage: https://github.com/HCBravoLab/Wrench
- Documentation: https://bioconductor.org/packages/release/bioc/vignettes/Wrench/inst/doc/Wrench.pdf
- License: Artistic-2.0
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Latest release: 1.26.0
published about 1 year ago
Rankings
Dependent repos count: 0.0%
Downloads: 13.0%
Average: 14.1%
Forks count: 18.4%
Stargazers count: 19.5%
Dependent packages count: 19.9%
Maintainers (1)
Last synced:
11 months ago
Dependencies
DESCRIPTION
cran
- R >= 3.5.0 depends
- graphics * imports
- limma * imports
- locfit * imports
- matrixStats * imports
- stats * imports
- DESeq2 * suggests
- edgeR * suggests
- knitr * suggests
- metagenomeSeq * suggests
- rmarkdown * suggests