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RNAmodR.RiboMethSeq

:package: RNAmodR.RiboMethSeq: detection of 2'-O methylations by RiboMethSeq

https://github.com/felixernst/rnamodr.ribomethseq

Science Score: 39.0%

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    Found 9 DOI reference(s) in README
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Keywords

bioconductor modifications r ribomethseq rna rnamodr

Keywords from Contributors

bioconductor-package
Last synced: 6 months ago · JSON representation

Repository

:package: RNAmodR.RiboMethSeq: detection of 2'-O methylations by RiboMethSeq

Basic Info
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  • Stars: 1
  • Watchers: 1
  • Forks: 0
  • Open Issues: 0
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Topics
bioconductor modifications r ribomethseq rna rnamodr
Created over 7 years ago · Last pushed almost 2 years ago
Metadata Files
Readme Changelog

README.md

RNAmodR.RiboMethSeq Build Status codecov

RNAmodR.RiboMethSeq uses classes and workflows from RNAmodR to detect 2'-O methylations from RiboMethSeq data.

The vignette from the RNAmodR.RiboMethSeq package provides details on the specific analysis of RiboMethSeq data. Have a look at the vignette from the RNAmodR package for a general description on the provided workflows.

Installation

The current version of the RNAmodR.RiboMethSeq package is available from Bioconductor.

``` if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager")

The following initializes usage of Bioc devel

BiocManager::install("RNAmodR.RiboMethSeq") library(RNAmodR.RiboMethSeq) ```

Literature

  • Birkedal U, Christensen-Dalsgaard M, Krogh N, Sabarinathan R, Gorodkin J, Nielsen H (2015): "Profiling of ribose methylations in RNA by high-throughput sequencing." Angewandte Chemie (International ed. in English) 54 (2), P. 451–455. DOI: 10.1002/anie.201408362.

  • Marchand V, Ayadi L, El Hajj A, Blanloeil-Oillo F, Helm M, Motorin Y (2017): "High-Throughput Mapping of 2'-O-Me Residues in RNA Using Next-Generation Sequencing (Illumina RiboMethSeq Protocol)." Methods in molecular biology (Clifton, N.J.) 1562, P. 171–187. DOI: 10.1007/978-1-4939-6807-7_12.

  • Galvanin A, Ayadi L, Helm M, Motorin Y, Marchand V (2017): "Mapping and Quantification of tRNA 2'-O-Methylation by RiboMethSeq". Wajapeyee N., Gupta R. (eds) Epitranscriptomics. Methods in Molecular Biology (Humana Press, New York, NY) 1870, P. 273-295. DOI: 10.1007/978-1-4939-8808-2_21.

Owner

  • Name: Felix Ernst
  • Login: FelixErnst
  • Kind: user

GitHub Events

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Last synced: 7 months ago

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  • Total Commits: 81
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  • Avg Commits per committer: 40.5
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Felix Ernst f****t@u****e 75
Nitesh Turaga n****a@g****m 6
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ulb.ac.be: 1

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Packages

  • Total packages: 1
  • Total downloads:
    • bioconductor 9,537 total
  • Total dependent packages: 0
  • Total dependent repositories: 0
  • Total versions: 5
  • Total maintainers: 1
bioconductor.org: RNAmodR.RiboMethSeq

Detection of 2'-O methylations by RiboMethSeq

  • Versions: 5
  • Dependent Packages: 0
  • Dependent Repositories: 0
  • Downloads: 9,537 Total
Rankings
Dependent repos count: 0.0%
Dependent packages count: 0.0%
Average: 25.0%
Downloads: 75.1%
Maintainers (1)
felix.gm.ernst@outlook.com
Last synced: 6 months ago