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SpectraQL

Mass Spec Query Language (MassQL) support for Spectra

https://github.com/rformassspectrometry/spectraql

Science Score: 36.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ✓
    Committers with academic emails
    2 of 4 committers (50.0%) from academic institutions
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (12.4%) to scientific vocabulary

Keywords from Contributors

bioconductor-package mass-spectrometry metabolomics genomics bioconductor proteomics core-package feature-detection peak-detection annotation
Last synced: 10 months ago · JSON representation

Repository

Mass Spec Query Language (MassQL) support for Spectra

Basic Info
Statistics
  • Stars: 9
  • Watchers: 4
  • Forks: 4
  • Open Issues: 8
  • Releases: 0
Created almost 5 years ago · Last pushed about 1 year ago
Metadata Files
Readme Changelog

README.md

MassQL for Spectra

Project Status: Active – The project has reached a stable, usable state and is being actively developed. R-CMD-check-bioc codecov :name status badge license years in bioc Ranking by downloads build release build devel

The Mass Spec Query Language (MassQL) is a domain specific language meant to be a succinct way to express a query in a mass spectrometry (MS) centric fashion. It is inspired by SQL, but it attempts to bake in assumptions of MS to make querying much more natural for MS users.

The SpectraQL package provides support for the MassQL language in R, for MS data represented by Spectra objects defined in Bioconductor's Spectra package.

For an introduction and use cases see the package vignette or the package documentation.

Contributions

Contributions are highly welcome and should follow the contribution guidelines. Also, please check the coding style guidelines in the RforMassSpectrometry vignette.

License

The SpectraQL code is provided under a permissive Artistic 2.0 license. The documentation, including the manual pages and the vignettes, are distributed under a CC BY-SA license.

Owner

  • Name: RforMassSpectrometry
  • Login: rformassspectrometry
  • Kind: organization
  • Email: maintainer@rformassspectrometry.org

R packages for mass spectrometry

GitHub Events

Total
  • Watch event: 1
  • Push event: 4
  • Fork event: 2
Last Year
  • Watch event: 1
  • Push event: 4
  • Fork event: 2

Committers

Last synced: about 1 year ago

All Time
  • Total Commits: 63
  • Total Committers: 4
  • Avg Commits per committer: 15.75
  • Development Distribution Score (DDS): 0.127
Past Year
  • Commits: 21
  • Committers: 3
  • Avg Commits per committer: 7.0
  • Development Distribution Score (DDS): 0.19
Top Committers
Name Email Commits
jorainer j****r@g****m 55
andreavicini a****i@m****t 4
J Wokaty j****y@s****u 2
A Wokaty a****y@s****u 2
Committer Domains (Top 20 + Academic)
sph.cuny.edu: 2 mail.polimi.it: 1

Issues and Pull Requests

Last synced: 11 months ago

All Time
  • Total issues: 8
  • Total pull requests: 16
  • Average time to close issues: N/A
  • Average time to close pull requests: 2 days
  • Total issue authors: 3
  • Total pull request authors: 2
  • Average comments per issue: 1.0
  • Average comments per pull request: 0.38
  • Merged pull requests: 16
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 1
  • Pull requests: 7
  • Average time to close issues: N/A
  • Average time to close pull requests: 2 minutes
  • Issue authors: 1
  • Pull request authors: 1
  • Average comments per issue: 1.0
  • Average comments per pull request: 0.0
  • Merged pull requests: 7
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • jorainer (6)
  • yguitton (1)
  • YasinEl (1)
Pull Request Authors
  • jorainer (19)
  • andreavicini (2)
Top Labels
Issue Labels
enhancement (1)
Pull Request Labels

Packages

  • Total packages: 1
  • Total downloads:
    • bioconductor 1,976 total
  • Total dependent packages: 0
  • Total dependent repositories: 0
  • Total versions: 3
  • Total maintainers: 1
bioconductor.org: SpectraQL

MassQL support for Spectra

  • Versions: 3
  • Dependent Packages: 0
  • Dependent Repositories: 0
  • Downloads: 1,976 Total
Rankings
Dependent repos count: 0.0%
Dependent packages count: 31.5%
Average: 42.4%
Downloads: 95.6%
Maintainers (1)
Johannes.Rainer@eurac.edu
Last synced: 11 months ago

Dependencies

DESCRIPTION cran
  • ProtGenerics >= 1.25.1 depends
  • R >= 4.1.0 depends
  • MsCoreUtils * imports
  • Spectra >= 1.5.6 imports
  • methods * imports
  • BiocStyle * suggests
  • knitr * suggests
  • msdata >= 0.19.3 suggests
  • mzR * suggests
  • rmarkdown * suggests
  • roxygen2 * suggests
  • testthat * suggests
.github/workflows/check-bioc.yml actions
  • actions/cache v2 composite
  • actions/checkout v2 composite
  • actions/upload-artifact master composite
  • r-lib/actions/setup-pandoc v2 composite
  • r-lib/actions/setup-r v2 composite