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GeneAccord

GeneAccord: An R package to detect patterns of mutual exclusivity and co-occurrence on the clone level in a cohort of cancer patients

https://github.com/cbg-ethz/geneaccord

Science Score: 10.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ○
    codemeta.json file
  • ○
    .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ✓
    Committers with academic emails
    1 of 2 committers (50.0%) from academic institutions
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (2.3%) to scientific vocabulary

Keywords

cancer clonal cooccurrence exclusivity mutual
Last synced: 6 months ago · JSON representation

Repository

GeneAccord: An R package to detect patterns of mutual exclusivity and co-occurrence on the clone level in a cohort of cancer patients

Basic Info
  • Host: GitHub
  • Owner: cbg-ethz
  • License: gpl-3.0
  • Language: R
  • Default Branch: master
  • Homepage:
  • Size: 2.96 MB
Statistics
  • Stars: 2
  • Watchers: 3
  • Forks: 0
  • Open Issues: 0
  • Releases: 0
Topics
cancer clonal cooccurrence exclusivity mutual
Created almost 8 years ago · Last pushed over 4 years ago
Metadata Files
Readme License

README.md

GeneAccord

This R package has functions to detect clonal exclusivity or co-occurrence patterns of altered genes or pathways in a cohort of cancer patients. Such clonally exclusive gene pairs may uncover synergies between co-existing clones.

The file geneAccord_AML.R reads in the data from the AML cohort and runs the three different GeneAccord tests on the data.

Contacts

Jack Kuipers ( jack.kuipers __ bsse.ethz.ch )

Owner

  • Name: Computational Biology Group (CBG)
  • Login: cbg-ethz
  • Kind: organization
  • Location: Basel, Switzerland

Beerenwinkel Lab at ETH Zurich

GitHub Events

Total
Last Year

Committers

Last synced: 10 months ago

All Time
  • Total Commits: 80
  • Total Committers: 2
  • Avg Commits per committer: 40.0
  • Development Distribution Score (DDS): 0.45
Past Year
  • Commits: 0
  • Committers: 0
  • Avg Commits per committer: 0.0
  • Development Distribution Score (DDS): 0.0
Top Committers
Name Email Commits
Jack Kuipers 3****s 44
arhofman a****e@b****h 36
Committer Domains (Top 20 + Academic)
bsse.ethz.ch: 1

Issues and Pull Requests

Last synced: 10 months ago

All Time
  • Total issues: 0
  • Total pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Total issue authors: 0
  • Total pull request authors: 0
  • Average comments per issue: 0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 0
  • Pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Issue authors: 0
  • Pull request authors: 0
  • Average comments per issue: 0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
Pull Request Authors
Top Labels
Issue Labels
Pull Request Labels

Packages

  • Total packages: 1
  • Total downloads:
    • bioconductor 4,413 total
  • Total dependent packages: 0
  • Total dependent repositories: 0
  • Total versions: 1
  • Total maintainers: 1
bioconductor.org: GeneAccord

Detection of clonally exclusive gene or pathway pairs in a cohort of cancer patients

  • Versions: 1
  • Dependent Packages: 0
  • Dependent Repositories: 0
  • Downloads: 4,413 Total
Rankings
Dependent repos count: 0.0%
Dependent packages count: 0.0%
Forks count: 19.8%
Average: 23.8%
Stargazers count: 24.9%
Downloads: 74.3%
Maintainers (1)
ariane.moore@bsse.ethz.ch
Last synced: 10 months ago